RNA id: TU302757


Basic Information

Item Value
RNA id TU302757
length 261
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G223130
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 41985564 ~ 41985824 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagtggcgattgctctaagactgcaagggaagctcagcttcccctaaaatgtaaaaaaataagtgattaaatatatactgttgtgtgtacatgtcactgattaaatatgcgctacaccgcgctgaacttagttcagaatcagcttcttatcactggtaacaccgcggctttcctctcactcattcccgcagcttcacagcgctgctttaaacagtgcacagacttcaatagcagAGCAAAGCGCGCGAagaaacgagacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302717 lncRNA upstream 470291 41506061 ~ 41515273 (+) True G223092
TU302714 lncRNA upstream 542507 41441520 ~ 41443057 (+) True G223090
TU302710 lncRNA upstream 680308 41304982 ~ 41305256 (+) True G223086
TU302703 lncRNA upstream 688635 41282609 ~ 41296929 (+) True G223079
TU302640 lncRNA upstream 823849 41122024 ~ 41161715 (+) False G223041
TU302759 lncRNA downstream 63096 42048920 ~ 42049162 (+) True G223132
TU302762 lncRNA downstream 191205 42177029 ~ 42177287 (+) True G223135
TU302792 lncRNA downstream 357017 42342841 ~ 42371581 (+) False gfra1
TU302842 lncRNA downstream 467025 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 503759 42489583 ~ 42489875 (+) True G223198
XM_022685159.1 mRNA upstream 691314 41287961 ~ 41294250 (+) True LOC103042542
XM_007260206.3 mRNA upstream 691314 41287963 ~ 41294250 (+) False LOC103042542
XM_007260212.3 mRNA upstream 706486 41276985 ~ 41279078 (+) True LOC103044280
XM_022684817.1 mRNA upstream 786739 41195985 ~ 41198825 (+) True LOC111195996
XM_022684797.1 mRNA upstream 792355 41184961 ~ 41193209 (+) True LOC103046574
XM_007260210.3 mRNA downstream 229919 42215743 ~ 42222054 (+) True LOC103043683
XM_022685162.1 mRNA downstream 257987 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA downstream 257987 42243811 ~ 42371477 (+) False gfra1
XM_007238585.3 mRNA downstream 725636 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 788421 42774245 ~ 42802285 (+) True fam204a
XR_002651928.1 other upstream 794685 41189350 ~ 41190879 (+) False LOC103046574
TU302648 other upstream 912248 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other upstream 912248 41065669 ~ 41073316 (+) False LOC103045954
TU302651 other upstream 912248 41065669 ~ 41073316 (+) False LOC103045954
LOC103047655 other upstream 1633099 40349881 ~ 40352465 (+) False LOC103047655
trnag-gcc_7 other downstream 424197 42410021 ~ 42410091 (+) True trnag-gcc_7
trnag-gcc_8 other downstream 424362 42410186 ~ 42410255 (+) True trnag-gcc_8
trnag-gcc_9 other downstream 424526 42410350 ~ 42410419 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 424690 42410514 ~ 42410584 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 424855 42410679 ~ 42410748 (+) True trnag-gcc_11

Expression Profile