RNA id: TU302759


Basic Information

Item Value
RNA id TU302759
length 243
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G223132
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42048920 ~ 42049162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaagagtcaaccacatccaacaggattaactgtggatgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccgggttgtatccaaaaaacataaaaccacggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttctaccagaactgtcc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302757 lncRNA upstream 63096 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 533647 41506061 ~ 41515273 (+) True G223092
TU302714 lncRNA upstream 605863 41441520 ~ 41443057 (+) True G223090
TU302710 lncRNA upstream 743664 41304982 ~ 41305256 (+) True G223086
TU302703 lncRNA upstream 751991 41282609 ~ 41296929 (+) True G223079
TU302762 lncRNA downstream 127867 42177029 ~ 42177287 (+) True G223135
TU302792 lncRNA downstream 293679 42342841 ~ 42371581 (+) False gfra1
TU302842 lncRNA downstream 403687 42452849 ~ 42453237 (+) True G223192
TU302848 lncRNA downstream 440421 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 482948 42532110 ~ 42532422 (+) True G223201
XM_022685159.1 mRNA upstream 754670 41287961 ~ 41294250 (+) True LOC103042542
XM_007260206.3 mRNA upstream 754670 41287963 ~ 41294250 (+) False LOC103042542
XM_007260212.3 mRNA upstream 769842 41276985 ~ 41279078 (+) True LOC103044280
XM_022684817.1 mRNA upstream 850095 41195985 ~ 41198825 (+) True LOC111195996
XM_022684797.1 mRNA upstream 855711 41184961 ~ 41193209 (+) True LOC103046574
XM_007260210.3 mRNA downstream 166581 42215743 ~ 42222054 (+) True LOC103043683
XM_022685162.1 mRNA downstream 194649 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA downstream 194649 42243811 ~ 42371477 (+) False gfra1
XM_007238585.3 mRNA downstream 662298 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 725083 42774245 ~ 42802285 (+) True fam204a
XR_002651928.1 other upstream 858041 41189350 ~ 41190879 (+) False LOC103046574
TU302648 other upstream 975604 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other upstream 975604 41065669 ~ 41073316 (+) False LOC103045954
TU302651 other upstream 975604 41065669 ~ 41073316 (+) False LOC103045954
LOC103047655 other upstream 1696455 40349881 ~ 40352465 (+) False LOC103047655
trnag-gcc_7 other downstream 360859 42410021 ~ 42410091 (+) True trnag-gcc_7
trnag-gcc_8 other downstream 361024 42410186 ~ 42410255 (+) True trnag-gcc_8
trnag-gcc_9 other downstream 361188 42410350 ~ 42410419 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 361352 42410514 ~ 42410584 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 361517 42410679 ~ 42410748 (+) True trnag-gcc_11

Expression Profile