RNA id: TU302842


Basic Information

Item Value
RNA id TU302842
length 389
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G223192
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42452849 ~ 42453237 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctttaaagctcaccttccgcgaaaatccgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctcccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggcggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302792 lncRNA upstream 81268 42342841 ~ 42371581 (+) False gfra1
TU302762 lncRNA upstream 275562 42177029 ~ 42177287 (+) True G223135
TU302759 lncRNA upstream 403687 42048920 ~ 42049162 (+) True G223132
TU302757 lncRNA upstream 467025 41985564 ~ 41985824 (+) True G223130
TU302717 lncRNA upstream 937576 41506061 ~ 41515273 (+) True G223092
TU302848 lncRNA downstream 36346 42489583 ~ 42489875 (+) True G223198
TU302851 lncRNA downstream 78873 42532110 ~ 42532422 (+) True G223201
TU302857 lncRNA downstream 176740 42629977 ~ 42630263 (+) True G223207
TU302871 lncRNA downstream 277360 42730597 ~ 42730923 (+) True G223218
TU302903 lncRNA downstream 485970 42939207 ~ 42941673 (+) True G223241
XM_022685162.1 mRNA upstream 81372 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 81372 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 230795 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1158599 41287961 ~ 41294250 (+) True LOC103042542
XM_007260206.3 mRNA upstream 1158599 41287963 ~ 41294250 (+) False LOC103042542
XM_007238585.3 mRNA downstream 258223 42711460 ~ 42721934 (+) True LOC103047539
XM_007238581.2 mRNA downstream 321008 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 455268 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 455284 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 736123 43189360 ~ 43193440 (+) True LOC103028407
trnag-gcc_45 other upstream 34180 42418599 ~ 42418669 (+) True trnag-gcc_45
trnag-gcc_44 other upstream 34345 42418434 ~ 42418504 (+) True trnag-gcc_44
trnag-gcc_43 other upstream 34510 42418269 ~ 42418339 (+) True trnag-gcc_43
trnag-gcc_42 other upstream 34675 42418104 ~ 42418174 (+) True trnag-gcc_42
trnag-gcc_41 other upstream 34840 42417939 ~ 42418009 (+) True trnag-gcc_41
trnag-gcc_46 other downstream 10062 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_47 other downstream 248420 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_48 other downstream 248752 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_49 other downstream 248921 42702158 ~ 42702228 (+) True trnag-gcc_49
TU302940 other downstream 710044 43163281 ~ 43166134 (+) True G223269

Expression Profile