RNA id: TU302871


Basic Information

Item Value
RNA id TU302871
length 327
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G223218
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42730597 ~ 42730923 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCACTActgcactttaaacactttaactttaaacaGTACCTcatcacacaaacataaacataccaataatcttattgtaactattgtTTGTGTCCCCTGTACTTTTGCCCTATAAGTGTGTTTGATGTCCCCTGTACCTTCTGCCCCtacactgtgtgttttgttttgcacttctcTGTATCTATCGTCTGAGCACTATTTACTCTGTCCTACACTTTTCTTGTCTGCACTGGAGATCTAGCCTAATAGTGTTTCGTTTTACTGTACAACCCTGTATcagtataatgacaataaattgaattgaattgaattgaattgaatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302857 lncRNA upstream 100334 42629977 ~ 42630263 (+) True G223207
TU302851 lncRNA upstream 198175 42532110 ~ 42532422 (+) True G223201
TU302848 lncRNA upstream 240722 42489583 ~ 42489875 (+) True G223198
TU302842 lncRNA upstream 277360 42452849 ~ 42453237 (+) True G223192
TU302792 lncRNA upstream 359016 42342841 ~ 42371581 (+) False gfra1
TU302903 lncRNA downstream 208284 42939207 ~ 42941673 (+) True G223241
TU302907 lncRNA downstream 283066 43013989 ~ 43014235 (+) True G223245
TU302954 lncRNA downstream 465145 43196068 ~ 43203769 (+) True G223274
TU302955 lncRNA downstream 465145 43196068 ~ 43203769 (+) False G223274
TU302957 lncRNA downstream 465145 43196068 ~ 43203769 (+) False G223274
XM_007238585.3 mRNA upstream 8663 42711460 ~ 42721934 (+) True LOC103047539
XM_022685162.1 mRNA upstream 359120 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 359120 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 508543 42215743 ~ 42222054 (+) True LOC103043683
XM_022685159.1 mRNA upstream 1436347 41287961 ~ 41294250 (+) True LOC103042542
XM_007238581.2 mRNA downstream 43322 42774245 ~ 42802285 (+) True fam204a
XM_007238579.3 mRNA downstream 177582 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA downstream 177598 42908521 ~ 42935835 (+) False rab11fip2
XM_022685170.1 mRNA downstream 458437 43189360 ~ 43193440 (+) True LOC103028407
XM_022685181.1 mRNA downstream 569963 43300886 ~ 43310949 (+) True LOC103043584
trnag-gcc_49 other upstream 28369 42702158 ~ 42702228 (+) True trnag-gcc_49
trnag-gcc_48 other upstream 28538 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_47 other upstream 28870 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_46 other upstream 267228 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_45 other upstream 311928 42418599 ~ 42418669 (+) True trnag-gcc_45
TU302940 other downstream 432358 43163281 ~ 43166134 (+) True G223269
TU302942 other downstream 433262 43164185 ~ 43165537 (+) False G223269
TU303125 other downstream 880700 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 949263 43680186 ~ 43752486 (+) False mcu
TU303483 other downstream 2165254 44896177 ~ 44899645 (+) False mcph1

Expression Profile