RNA id: TU302903


Basic Information

Item Value
RNA id TU302903
length 2467
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G223241
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42939207 ~ 42941673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttaatttcacttGCTGAGTATGTGATGCATTCCTAGTGCCATCATTTTAATTACCATGCTGGAGTTCAGTGAActctttagctccacccatttttttaaactaatgttTGCCTTAATTTTATACACTTTTACTGTATTGATAAGGCTAAATGAGACACCTAAAATTAATCAAAAGTCCATAGTATTGAGACCAAGGTTGTATCTTAGTAGGCATTGGCTCTGGGAGATACTTAAGATACTGCTAGCTTCCTGCCATGTTGGTGTTACAGTAATATAATCTATTAGAGATGTCAGCtgctaaaaaacatttttttttttttttggagaaaaaaaaaagaacctgtCAGTCACTCTCATTCCTGCTTTGTTACCCAGAGTTTAGCTATTCAGGCTTAAACTCAgcttctctgtctgtctaactCTCCTCAGCCTGTCTAGCCTTCTATTTTAGCGTAAAGAGgaacttcctcttacagcgtttCTCCTTTGTCTGAGTGACTCACCTCTGATAAGAGGCTCATAGCTGTCTGGTGGTGATATGCTCCTGGCTGAGTTCCTTCAGAACCCGTCAGCAAAACCAGAAACCTGCAGGTGGGAACTGTAGAATATGCTAGCTATTTACTAGCCAGCATTGAAAATTAGACTATGTTTTTAGACTGACTGACCAAATCAGATTTTGGCAAATTTAGTTTGTATCAAGAAAGAAACCTCAtgaaggccctattttagcaatctataaaACACAAGTCAATTGCACATACCCCTTTGGTATCGCGAGGGTGCAAAAAATGTGCCTTGCACAGCttaaaacacgcaaaaggcatgtgctaattctcttaattaatcatggttcTGGTTAATTTTGatcttaacataaaataaaccaatcaatgtaTGAGTTGCCATATATCTTTTTCTCTTATCACAATTAAATAGAggtatttttgccattttctttctgTGTGACTTGTTGCCTTCATACTGTATAGCATCTGTCGtgcaattaaaacaaacaaacgaggaggaggagaaggaggagaaggatAGGATGTCCTGAttacaaataaagaaacaaacacactgaaaaaaaaaacaggaaaaaagaaagaaagttaggaaataaattattatataacccCTATAGTTTAGTTAACTAGTCGGAACCAAGTTTAGCCCTTTAATTTATGAGGTAACTCCTCGATGTGCCCTTATTTTTATAAAGCAGCCACATTGACCATAATGACTCTATCTCTCTGCTGGCTGCTGTATTGGAGCAAAATtcactttaaatgtttaaatacccTGAAAAAGGTACATTatcttaaaaaagtatttgcatgAGAATCAAATGTATTAGACAGAAAAGAATGAATGGTTTTAGACAGTATATGCTTAACTCactttgaatgttttttttttttttgtaaaaaaataaaataaataataataataataaaaatgaaggaTGAGCAgtcttatacagtatatacacatataattaCGTAGGCTTAATATTATTGAAAGATcggttattaaaaaaaaaagtggtgctCACAGATTTTTGAGAGTTGCGAGTAGAGTGTAAGTAGTCTTGTTTGCCACGAGTGCAGCTGCATTGTACAAAAAGTtgtataaactaaactaaactaaactaagcggTTTGGGCTCACTGTGCGGAAATGCTGTTCGTTCTGAAGGTTTGAACGTTTCCTCAGTGCTACAGGAGGGCTGTACTTCCATGCAACTGACGTTTTGCACAGTGCATTAGTGCCATCCACAGTGTTACATGTAGTGCGGGTGTTCTTGAGTTTGTGTAGATGTTGATTTGGGAACAAATGAATGAAATCGAATGGCTTCACAAAGCTTTCATAAGCTTTCACCTTCCTTTAGCCAATGTAGAGTACTGTGTAAAGGTCAGAGACCATTGTTCATTTCTTTAACTGAAGGATATCCTGTTAAAATAAGTACATTAAGTACAATTTATTGATTGTGGGTGGGGCTGCAAGATATATCGTTCAACTTAAggcaagaagtagatacacagcactgtctctgtgtctgtgtgagtgacgggctactgctgcctgagaagcgcaagGGGGAGGGCAAGGGGAGTCGAAAGCTGTgcagttccagttacagctgaatttacgATTTTAATGCCcaattaaagggccgattactgttggtTTGCTGTTCTActcgggttttgagttgagcttgGCGCTggctcagctcttgattggtcagCAAGCGAGACAGCACACGGATGGGGGCGGTAATCAATATGAAGCTTCCATGTAATGGATTATGTGACtgcaagtttttaaaaaaatgaaagaaggtCTCTGGTGTTTGCACTGTAATTTACTGTGTAATTGAAGTGAATTTAAAACGCAATGCTGTTAAATGCTGatggtgaaaataaatgaataaatgaaagaatgatcgaataaacaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302871 lncRNA upstream 208284 42730597 ~ 42730923 (+) True G223218
TU302857 lncRNA upstream 308944 42629977 ~ 42630263 (+) True G223207
TU302851 lncRNA upstream 406785 42532110 ~ 42532422 (+) True G223201
TU302848 lncRNA upstream 449332 42489583 ~ 42489875 (+) True G223198
TU302842 lncRNA upstream 485970 42452849 ~ 42453237 (+) True G223192
TU302907 lncRNA downstream 72316 43013989 ~ 43014235 (+) True G223245
TU302954 lncRNA downstream 254395 43196068 ~ 43203769 (+) True G223274
TU302955 lncRNA downstream 254395 43196068 ~ 43203769 (+) False G223274
TU302957 lncRNA downstream 254395 43196068 ~ 43203769 (+) False G223274
TU302958 lncRNA downstream 254395 43196068 ~ 43203769 (+) False G223274
XM_007238579.3 mRNA upstream 3372 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA upstream 3372 42908521 ~ 42935835 (+) False rab11fip2
XM_007238581.2 mRNA upstream 136922 42774245 ~ 42802285 (+) True fam204a
XM_007238585.3 mRNA upstream 217273 42711460 ~ 42721934 (+) True LOC103047539
XM_022685162.1 mRNA upstream 567730 42243811 ~ 42371477 (+) True gfra1
XM_022685170.1 mRNA downstream 247687 43189360 ~ 43193440 (+) True LOC103028407
XM_022685181.1 mRNA downstream 359213 43300886 ~ 43310949 (+) True LOC103043584
XM_022685182.1 mRNA downstream 389844 43331517 ~ 43335981 (+) False LOC111196053
XM_022685184.1 mRNA downstream 389845 43331518 ~ 43335986 (+) True LOC111196053
XM_007238564.2 mRNA downstream 538746 43480419 ~ 43569433 (+) False LOC103041531
trnag-gcc_49 other upstream 236979 42702158 ~ 42702228 (+) True trnag-gcc_49
trnag-gcc_48 other upstream 237148 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_47 other upstream 237480 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_46 other upstream 475838 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_45 other upstream 520538 42418599 ~ 42418669 (+) True trnag-gcc_45
TU302940 other downstream 221608 43163281 ~ 43166134 (+) True G223269
TU302942 other downstream 222512 43164185 ~ 43165537 (+) False G223269
TU303125 other downstream 669950 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 738513 43680186 ~ 43752486 (+) False mcu
TU303483 other downstream 1954504 44896177 ~ 44899645 (+) False mcph1

Expression Profile