RNA id: TU302940


Basic Information

Item Value
RNA id TU302940
length 1463
RNA type TUCP
GC content 0.56
exon number 5
gene id G223269
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 43163281 ~ 43166134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACTTCCACATCCGAAGCCACCACAACACATctgaagtttattttatttattatttaatctgtTCCATTTTTATAGAATTTGCTCACCTTCAGGACAACCTCCCTGATTCACTGATCACACTAACTGTATCTGAGTGAGCTCAATTGAATACTCTAAGCATGCACAACAAAAGGGGAATGATCTACTTCAAGATGGAGGTCGAACTGTTTGTCAAAAGAAGGCCCTCACCACGTTTGGCATGACAATTCAAAGATTTCGCAACTATGCAATAGATCTGTTAAATGTACGGCAGAGAAGATATCGTCACAATACCAAAGAGGTTACAGAATAGGTCAAGGCTGTGGAGGCCGTTAGAAGATAAGTGGAGCCGCTAGCGGCGGACCGTGGTCCAACCATCGTCATCGGTCTCGTTCTTGGTGCGGCGCGGGTTGTCTTTTTCCTTGTCGGTGCGCCAGGTACTCTTTTCACCATCACACTCACGCTCACGTTCCCGGGGTTTTGGAGGAGTATCTCGGTCCTCCTTACGTTCTTCACGCCGTTCTTCTCCTGCACGGCGCCAAGACCCTCTTCATTGTCTCTTGGGGGAGGCCTGTGTTCACGATCACGATCTCGGTCACGGTCGTCTCTCCGGTCTCTCACGTCACGACGGTCGCGGCGATCTTCTCTGTCGAAGTCCTCGCGTCGAGAAGAGTCACGCCAGCTGTTGGTCTCCTCTGTGCCTCCCCTCCTCCAGACTCCTTCATCCCTGGGTGGACGACGGTCTCTGAAATGCCCCTCACCGCGCTCATCTCCATCTTGATCGCCATCCTCATCCTGACCTCCAGATTCACGGGGAGGACCCCAGCTCTCTTCACGGGCCTTCTCCCGCTCTCTCCATCCACCTGAAGGTTTCCATGGTCTGGCGTCTTCACCACGGCGTGGACCAGAGTCATCCATGCCCCTACGGCCCCCTCGGTCATCATCCCCTCCTCTTCTGGGGCCCCAGTCATCATCAGCACCACGTCTTGGGGTTCTGGGTTCGTCCATGCCACGGCGAGGACCACGATCATCGTCAAAGCCACGTCTAGGCCCACGGTCATCATCCATACCACGCCTCGGGCCCCGGTCGTCATCAAAGCCTCTCCTGGGTCCACGGTCATCATCCATGCCTCTTCTCGGACCACGGTCGTCATCAAACCCTCGCCTGGGTCCACGATCATCATCGAAGCCTCGCCTGGGCCCACGGTCATCATCAAAGGCTCGACGTGGTCCGcgatcttcatcaccaccacgcCTCGGACCTCGATCATCTTCAAAACCACGACGGGGGCCTTTGTCGTCAGAACCTCCGCGGCGGGGTCCGTCGCCTCCTCTCCTGAAGGGTGTATCACGCTCCTCGTGCTCTGGCTCTTCACGGCCTTCGCCACGCCAGTCCTTCCCTTCACCAACAGGGCGTCGCCACTCTGACTCGCCGCCGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302907 lncRNA upstream 149046 43013989 ~ 43014235 (+) True G223245
TU302903 lncRNA upstream 221608 42939207 ~ 42941673 (+) True G223241
TU302871 lncRNA upstream 432358 42730597 ~ 42730923 (+) True G223218
TU302857 lncRNA upstream 533018 42629977 ~ 42630263 (+) True G223207
TU302851 lncRNA upstream 630859 42532110 ~ 42532422 (+) True G223201
TU302954 lncRNA downstream 29934 43196068 ~ 43203769 (+) True G223274
TU302955 lncRNA downstream 29934 43196068 ~ 43203769 (+) False G223274
TU302957 lncRNA downstream 29934 43196068 ~ 43203769 (+) False G223274
TU302958 lncRNA downstream 29934 43196068 ~ 43203769 (+) False G223274
TU302963 lncRNA downstream 46256 43212390 ~ 43214161 (+) True G223276
XM_007238579.3 mRNA upstream 227446 42908505 ~ 42935835 (+) True rab11fip2
XM_015602807.2 mRNA upstream 227446 42908521 ~ 42935835 (+) False rab11fip2
XM_007238581.2 mRNA upstream 360996 42774245 ~ 42802285 (+) True fam204a
XM_007238585.3 mRNA upstream 441347 42711460 ~ 42721934 (+) True LOC103047539
XM_022685162.1 mRNA upstream 791804 42243811 ~ 42371477 (+) True gfra1
XM_022685170.1 mRNA downstream 23226 43189360 ~ 43193440 (+) True LOC103028407
XM_022685181.1 mRNA downstream 134752 43300886 ~ 43310949 (+) True LOC103043584
XM_022685182.1 mRNA downstream 165383 43331517 ~ 43335981 (+) False LOC111196053
XM_022685184.1 mRNA downstream 165384 43331518 ~ 43335986 (+) True LOC111196053
XM_007238564.2 mRNA downstream 314285 43480419 ~ 43569433 (+) False LOC103041531
trnag-gcc_49 other upstream 461053 42702158 ~ 42702228 (+) True trnag-gcc_49
trnag-gcc_48 other upstream 461222 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_47 other upstream 461554 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_46 other upstream 699912 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_45 other upstream 744612 42418599 ~ 42418669 (+) True trnag-gcc_45
TU303125 other downstream 445489 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 514052 43680186 ~ 43752486 (+) False mcu
TU303483 other downstream 1730043 44896177 ~ 44899645 (+) False mcph1
TU303518 other downstream 1814304 44980438 ~ 44981140 (+) False polh
TU303660 other downstream 2081238 45247372 ~ 45258901 (+) False gng4

Expression Profile