RNA id: TU303553


Basic Information

Item Value
RNA id TU303553
length 201
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G223640
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45127247 ~ 45127447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAAACGCTGAAGCATTAtattagttaaaatatttatttactacgGTTGAAAAGCTGGAGTTTGATTAACAGAAGCCGTTTAGTAATAATCTACTGAGCGCAGCAGAACCAGCAGAAATCCTCTGTACCTCGTCATAGTTAATGATAGTTGCAGTTGGAATGTTTGGTCCAAGCGATCTGCTTGCTTCCCACCCAAAAT

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00500 Starch and sucrose metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303550 lncRNA upstream 2046 45124879 ~ 45125201 (+) True G223637
TU303549 lncRNA upstream 4293 45122629 ~ 45122954 (+) True G223636
TU303548 lncRNA upstream 5548 45121280 ~ 45121699 (+) True G223635
TU303544 lncRNA upstream 10020 45117023 ~ 45117227 (+) True G223632
TU303543 lncRNA upstream 11423 45114626 ~ 45115824 (+) True G223631
TU303557 lncRNA downstream 7229 45134676 ~ 45135048 (+) True G223642
TU303558 lncRNA downstream 10897 45138344 ~ 45139201 (+) True G223643
TU303559 lncRNA downstream 14002 45141449 ~ 45141684 (+) True G223644
TU303562 lncRNA downstream 21819 45149266 ~ 45149510 (+) True G223647
TU303647 lncRNA downstream 57263 45184710 ~ 45184947 (+) False LOC107197130
XM_007238536.3 mRNA upstream 28193 45042650 ~ 45099054 (+) True pcsk2
XM_022685217.1 mRNA upstream 111286 45011261 ~ 45015961 (+) True otor
XM_022684779.1 mRNA upstream 139237 44980402 ~ 44988010 (+) True polh
XM_007238539.3 mRNA upstream 159639 44965742 ~ 44967608 (+) False tmem14a
XM_007238540.3 mRNA upstream 163142 44951043 ~ 44964105 (+) True agpat5
XM_007238532.2 mRNA downstream 32091 45159538 ~ 45161992 (+) True dnajc12
XM_007238533.3 mRNA downstream 35269 45162716 ~ 45166158 (+) True LOC103032313
XM_022685224.1 mRNA downstream 39899 45167346 ~ 45171173 (+) True gpatch11
XM_022685225.1 mRNA downstream 39899 45167346 ~ 45171173 (+) False gpatch11
XM_022685226.1 mRNA downstream 44395 45171842 ~ 45184873 (+) True LOC107197130
TU303518 other upstream 146107 44980438 ~ 44981140 (+) False polh
TU303483 other upstream 227602 44896177 ~ 44899645 (+) False mcph1
TU303156 other upstream 1374761 43680186 ~ 43752486 (+) False mcu
TU303125 other upstream 1511858 43611623 ~ 43615389 (+) True G223335
TU302942 other upstream 1961710 43164185 ~ 43165537 (+) False G223269
TU303660 other downstream 119925 45247372 ~ 45258901 (+) False gng4
TU303669 other downstream 165563 45293010 ~ 45313346 (+) False arid4b
TU303772 other downstream 270249 45397696 ~ 45402815 (+) True G223798
TU303777 other downstream 270383 45397830 ~ 45402815 (+) False G223798
TU303778 other downstream 270383 45397830 ~ 45402815 (+) False G223798

Expression Profile