RNA id: TU303660


Basic Information

Item Value
RNA id TU303660
length 972
RNA type TUCP
GC content 0.61
exon number 3
gene id gng4
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45247370 ~ 45258924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGTGTTCTCCTGCTCTCGCTGCTGTGCTGTGGAGCCCCGGGGCTGAGCCCACTTCTTCTTTAAAGGCGCATCTGGACCATCCGGCCACCACCTCCCGCTCCGCCCGCTCCCTCCGCCGCCGCtcccgctgctgctgctctcctgCGTCACACCGCGAGGTTCCCTCACTCACATCTGGCGGATAgaaagatagggagagagagagacagctcagctagagagagagagacagactccAGGCTGATTAGCTATAGCTGCCATCGACAGACAGACACATCACCGGagagaaagcccagcagcgtctccaCGGTGTGAAGCAGAACCGCGGACCGACCGCCGgctccccccctcctcctcctcctccgcctcCTGCTGCTCCCGATCCGCGCGGGTTGGTCTCTGAGCCGAACCGAGCCGAGCAGCGCCGCTGTGGGTTCTGTCTGTTTTCGCTCCcgttcctctcctctctctccatcagctCGCTTTCCTTTCCGAGCCCAGTTTGACGGAATTTGACGGAACCGCTCGCAGGGTGGAGTCGACCCGGTTCTGTCGGTGCTGCTGAGGAGAGACGCTCATCACTGGCGCGCTGCAGCTATACAGGGTGCAGTCATGAAGGACGGCATGGCCAACAACAGCACTGCCAGTATTTCCCAGGCTCGGAAAGCTGTGGAGCAACTGAAAATGGAAGCCTGTATGGACAGAATAAAGGTGTCTAAAGCAGCGGCGGATCTGATGGCCTACTGTGACGCTCATATACGAGAGGACCCGCTGATCGTGCCGGTTCCGGCCTCGGAGAACCCGTTCCGAGAGAAGAAGTTTTTCTGCACCATCCTCTGAGACCGGCCTGGACACCACCTCCGTCCAGAGGATACCGCACCCACGGCTGCCAGTGTTGAGCTTTGGGTTTGAGTGGCGGCCGCGTCTGTTGTTGGGTCAGTTCCCTCCTGATGGCCTGAAATGCAAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303647 lncRNA upstream 62425 45184710 ~ 45184947 (+) False LOC107197130
TU303562 lncRNA upstream 97862 45149266 ~ 45149510 (+) True G223647
TU303559 lncRNA upstream 105688 45141449 ~ 45141684 (+) True G223644
TU303558 lncRNA upstream 108171 45138344 ~ 45139201 (+) True G223643
TU303557 lncRNA upstream 112324 45134676 ~ 45135048 (+) True G223642
TU303741 lncRNA downstream 106389 45365290 ~ 45365938 (+) True G223780
TU303788 lncRNA downstream 167279 45426180 ~ 45428067 (+) True G223802
TU303789 lncRNA downstream 169588 45428489 ~ 45429041 (+) True G223803
TU303790 lncRNA downstream 171778 45430679 ~ 45437007 (+) True G223804
TU303791 lncRNA downstream 171778 45430679 ~ 45431616 (+) False G223804
XM_022685227.1 mRNA upstream 1994 45185644 ~ 45245378 (+) True lyst
XM_022685228.1 mRNA upstream 1994 45185644 ~ 45245378 (+) False lyst
XM_015602803.2 mRNA upstream 1994 45185644 ~ 45245378 (+) False lyst
XM_007238535.3 mRNA upstream 1994 45185645 ~ 45245378 (+) False lyst
XM_022685226.1 mRNA upstream 62499 45171842 ~ 45184873 (+) True LOC107197130
XM_007238528.3 mRNA downstream 7031 45265932 ~ 45277765 (+) True b3galnt2
XM_022684780.1 mRNA downstream 34101 45293002 ~ 45333281 (+) True arid4b
XM_007238523.2 mRNA downstream 77434 45336335 ~ 45339571 (+) True LOC103029137
XM_007238522.3 mRNA downstream 99808 45358709 ~ 45361946 (+) True LOC103028822
XM_022685234.1 mRNA downstream 125467 45384368 ~ 45386035 (+) True LOC111188191
TU303518 other upstream 266232 44980438 ~ 44981140 (+) False polh
TU303483 other upstream 347727 44896177 ~ 44899645 (+) False mcph1
TU303156 other upstream 1494886 43680186 ~ 43752486 (+) False mcu
TU303125 other upstream 1631983 43611623 ~ 43615389 (+) True G223335
TU302940 other upstream 2081238 43163281 ~ 43166134 (+) True G223269
TU303669 other downstream 34109 45293010 ~ 45313346 (+) False arid4b
TU303772 other downstream 138795 45397696 ~ 45402815 (+) True G223798
TU303777 other downstream 138929 45397830 ~ 45402815 (+) False G223798
TU303778 other downstream 138929 45397830 ~ 45402815 (+) False G223798
TU303861 other downstream 265497 45524398 ~ 45532148 (+) True G223850

Expression Profile