RNA id: XM_007229474.3


Basic Information

Item Value
RNA id XM_007229474.3
length 1931
RNA type mRNA
GC content 0.50
exon number 11
gene id lef1
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6648941 ~ 6728983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATaagaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290842 lncRNA upstream 16568 6632065 ~ 6632374 (+) True G214290
TU290835 lncRNA upstream 67209 6581294 ~ 6581733 (+) True G214283
TU290742 lncRNA upstream 175198 6380944 ~ 6473744 (+) True G214215
TU290760 lncRNA upstream 178742 6469473 ~ 6470200 (+) True G214227
TU290692 lncRNA upstream 373019 6275714 ~ 6275923 (+) True G214174
TU290862 lncRNA downstream 27583 6756405 ~ 6756758 (+) True G214304
TU290875 lncRNA downstream 28150 6756972 ~ 6759193 (+) True G214313
TU290877 lncRNA downstream 28150 6756972 ~ 6757303 (+) False G214313
TU290876 lncRNA downstream 29947 6758769 ~ 6759193 (+) False G214313
TU290924 lncRNA downstream 139895 6868717 ~ 6869146 (+) True G214340
XM_007229479.3 mRNA upstream 190621 6454447 ~ 6458321 (+) True LOC103036066
XM_007229478.3 mRNA upstream 200776 6435721 ~ 6448166 (+) True LOC103035747
XM_015604613.2 mRNA upstream 215814 6428242 ~ 6433128 (+) True LOC103042697
XM_007229480.3 mRNA upstream 233324 6411469 ~ 6415618 (+) True LOC103036371
XM_022685002.1 mRNA upstream 241566 6399221 ~ 6407376 (+) False LOC111196031
XM_022684512.1 mRNA downstream 56768 6785590 ~ 6993387 (+) True gstcd
XM_022684514.1 mRNA downstream 283697 7012519 ~ 7142268 (+) True npnt
XM_007234302.3 mRNA downstream 283697 7012519 ~ 7142268 (+) False npnt
XM_022684515.1 mRNA downstream 283698 7012520 ~ 7142268 (+) False npnt
XM_007234303.3 mRNA downstream 283698 7012520 ~ 7142268 (+) False npnt
trnam-cau_43 other upstream 167313 6481558 ~ 6481629 (+) True trnam-cau_43
TU290727 other upstream 239874 6399076 ~ 6409068 (+) True LOC111196031
trnak-cuu_9 other upstream 322885 6325985 ~ 6326057 (+) True trnak-cuu_9
TU290693 other upstream 364574 6283781 ~ 6284368 (+) True G214175
TU290451 other upstream 1127267 5521184 ~ 5521675 (+) True G214006
TU291318 other downstream 1082171 7810993 ~ 7813032 (+) False pold4
XR_002651890.1 other downstream 1127340 7856162 ~ 7877118 (+) False LOC103021346
TU291488 other downstream 1382126 8110948 ~ 8111325 (+) True G214773
TU291737 other downstream 2229477 8958299 ~ 8961770 (+) False LOC103041196
TU292392 other downstream 3846673 10575495 ~ 10583088 (+) True sprn

Expression Profile