RNA id: XM_022684506.1


Basic Information

Item Value
RNA id XM_022684506.1
length 2995
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC103036975
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6387504 ~ 6398481 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTACTTATCCAAGACTTTCCCGGGCTCGTGTTGCTGCTGTTAGTGTTGGAGATCTATGGTTTTGATAGTTAGAGGAGTTTGAAGATTGGAATAACCGGTGTGCACGGCGTTTGGACAATTGAGAGACACATGTGGAATTAcgtactaaacaaaaaaatgtttgaatgagctggagcttcacaactattgttcagcacctccaggaactcctacaagacgctgagaaaactattccagGTACTAAAATCGAGAATGGCGGTGACAGTGTCGAGTGACTTGTCTGTGAATGTAAGTGAAGATCAAGTTGTGAAGAAATTAACAGACAAACAGGAAGTCTTAAAAGAGAGCTTACGCAAAGGGGAGCCCAAAGCCATGGGGATTTGCCAAGTGATGGTGGGGTTTATGGTCATCTCCTATTCTATTCCACTGCTCTCTGCTGAGTTCACACAGCTGGTCTGGTTTGGTGTGCCGTGGTGGAGCGGCCTAACATTTGTTGCTGCAGGTACTATGGCTTTAGTAATGGAAAAACGCAACAGCATACAACTGGTCCTGGCATGCTTGCTAATCACAATAGCGGCTGCATTCATCTCCGTCCTTGCACTGGTCTTCTACTTCGTTGACCTTCTGAAGAACCCAGAACATAAATGCATGGAGAACCAGACGAATTTGCCCGAAAATACATGCGAACAACTTTATCATGGCAGTGTTTTCAGCAAAGACATGAAGTCAATTCTTATGTGCCTGACTGTAGTGCAGACTGGCATCTCCTCTGCTTTTTCATACATGCTGTACAGCGAACGGAAAAGGTTTATCCGCTACTCGCTTGTGAATTGAAGATCTCCTGTTTATCATATAACCTCGACGTTCAGGACTCCAATCTACATATGGCGCACATCTCTGCAACTTCTTTGTTATGTCTGTAATACATTGCTTCAACTGTACCTTAATACATTTACTGACCAAAAATATCACATCAAAAAGGAGTTGATGGATTGGAATGAAACTCTGTAAGTGTGAATGTTATGATGATATATGCAAGTGATTAAAACATTAGAGTGTAAGGAAAGGTTTATTAGGGGAAACTGCACAATAGCAAGGAGACTCTAGAATGCCAGTCTCAGCTGGTCCCATAAATGCTCTATTAACAAGAAATCTGGCGACTGGCAGGAcaagaaaagtgttttaatcCAGCAGAGAaattcctgggaaacccttatggtgtgtgggtgagcattattgTGCTAACAATTTCCAGTTGGAAGCCCCGCCATGAGAGCCAACATACTGAATGTGCTACACCTATTATTGAGCTCTTTGCGTCCCCCTGATCACTACTACAGGTGACTAGCTGATGTTTATGTTGGCTCCCCAGATCAAAGCTTTAGAAGTTAGGGTAGTGTGTTGTTACACAGCAAAGGCAGGATGGAAGCACTACATGAATGTTGTTGGATCCCAAACAGACAACACAGTTTCAGTCTGCAGTGGTACAGGTTTCTTGTTTTTATGACAtctctacaaaaaaaatcagtggtACCTAATCACCTAGATGGCAGGcaatttgtaaaaaaagatcatcctgcttctctcagttCAATGATGCATCCATATTAAAAGTCTGGGCATATTGTCTTTGAGTGtttgtagaggcatgtctagcagtccaCAATCTCTcatcaagaggtacactacctaaaAGTAGCCTCTGAGGTAATTTCTATAGGACAGTGGGAAAAGCACTATTAAGACCTTCTTGTGGAAAGTCTCACTGTCCTATAAGGCCATACCTGTTATCATTTACACAGACATAACTGCACGTCAAGGTTTGCAGACATtgtatgctttatttttttttgccaataagTGCATATTGCTTTATATATTGGACATTATGTATTTGCGGGTGTTTTAAGTTGTGTCAGtgttgtataaatgtattattactttttttatctgCATCAAAATCACATCAAAAGCAGGGCAGTTGTGAAAGGGTTAAATTTCAGCTGTAAAGAGAGCGCTGGATCTAAGAGGTCTGTTGTTTTTCATGCTTCCTTGAATGGACAGTGAGAGCTGTGTTGTGTTGAATCTTGCAGCCGCTGGCCTTTAACCTTCTGAAATTCTTCCAATTGTCCCTACAGTATTTCTCTCTCATAGCAACAGACATGCTAGGCTTTTCGGCCTCTGTGAGAGAAGACACTTACTTTTTCACTCTGCAGTACATTTAGAAGTGATGAAAAGCTTAGTAACCACTCACACAATGTTCATTTGTTAAAGCACAGCAGGATGAATTACTTCCCAGAACTGTGAGTGTTTCTAAGAATTGCAAGTGAAGAGTTTCCAAATTACATTACAGTATTATACTCTGTCATGCAGGAATTGTGTCTGAAGACTTTTGCTATGTCCCCTGGAAACTGAAGAACAGTGAACTGGGAGTAACCTGTCTGGTTGCATGGACAATTTAGCCAGACGCCACTGGTGACAATCATTAACATCCACTACACTTTTtaggtggtaatgccttttacAACATATTTTTGGTCCATCTGGCACCCATTATCAGGCCTCAATGTGACAATGTATGTTAACTTACCATGAGCACTCAGGCCAGCCTTCAACATAACTTTCTCAACTTTTTGTAATTTGGTAAATAATGGTCAATTACTCATCGTGAAGCTTTTAAATTGCTTGTGTGTAAAGTTCACTTTCAGCAGCatattacactaaaaaaaaacaatatcagtaaaaattgtatttatggAACCAAATTATTCAAATAATCAGTTTAATTAAAActtaatagaaaaatacaatttctTGACACATGCGTTATCTTTGCAAAATGTCTTTTGAATATCGCCAAACAAGTACtctaatgcatttataatgattCAGAATGTTGTTTTGATGTTAACTAAAGAATGTATGTTTGCCActtaaatgtttgtgttttttttatggaaatatGTTTATAAAGGTGAAATTATAAATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290692 lncRNA upstream 111581 6275714 ~ 6275923 (+) True G214174
XR_002651891.1 lncRNA upstream 151784 6218386 ~ 6235720 (+) True LOC111195955
TU290632 lncRNA upstream 274494 6112603 ~ 6113010 (+) True G214134
XR_002651903.1 lncRNA upstream 299907 6086759 ~ 6087597 (+) True LOC111195966
TU290624 lncRNA upstream 301003 6086241 ~ 6086501 (+) True G214126
TU290760 lncRNA downstream 70992 6469473 ~ 6470200 (+) True G214227
TU290835 lncRNA downstream 182813 6581294 ~ 6581733 (+) True G214283
TU290842 lncRNA downstream 233584 6632065 ~ 6632374 (+) True G214290
TU290848 lncRNA downstream 266730 6665211 ~ 6698418 (+) True G214294
TU290862 lncRNA downstream 357924 6756405 ~ 6756758 (+) True G214304
XM_007229486.3 mRNA upstream 63274 6314852 ~ 6324230 (+) True LOC103038786
XM_015604677.2 mRNA upstream 63274 6314852 ~ 6324230 (+) False LOC103038786
XM_007229487.3 mRNA upstream 74897 6302716 ~ 6312607 (+) True LOC103039100
XM_007229489.3 mRNA upstream 87953 6293110 ~ 6299551 (+) True LOC103039606
XM_022684419.1 mRNA upstream 203328 6180250 ~ 6184176 (+) True LOC111195932
XM_022685003.1 mRNA downstream 738 6399219 ~ 6407376 (+) False LOC111196031
XM_022685001.1 mRNA downstream 740 6399221 ~ 6407376 (+) False LOC111196031
XM_022685002.1 mRNA downstream 740 6399221 ~ 6407376 (+) False LOC111196031
XM_007229480.3 mRNA downstream 12988 6411469 ~ 6415618 (+) True LOC103036371
XM_015604613.2 mRNA downstream 29761 6428242 ~ 6433128 (+) True LOC103042697
trnak-cuu_9 other upstream 61447 6325985 ~ 6326057 (+) True trnak-cuu_9
TU290693 other upstream 103136 6283781 ~ 6284368 (+) True G214175
TU290451 other upstream 865829 5521184 ~ 5521675 (+) True G214006
TU290305 other upstream 1213408 5173069 ~ 5174096 (+) True G213891
TU290072 other upstream 1958542 4398585 ~ 4428962 (+) True G213715
TU290727 other downstream 595 6399076 ~ 6409068 (+) True LOC111196031
trnam-cau_43 other downstream 83077 6481558 ~ 6481629 (+) True trnam-cau_43
TU291318 other downstream 1412512 7810993 ~ 7813032 (+) False pold4
XR_002651890.1 other downstream 1457681 7856162 ~ 7877118 (+) False LOC103021346
TU291488 other downstream 1712467 8110948 ~ 8111325 (+) True G214773

Expression Profile