RNA id: XM_007230877.3


Basic Information

Item Value
RNA id XM_007230877.3
length 2461
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC103042087
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26273839 ~ 26284115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCGGGTGTGATGAGGGTGCAGCAGTGGGCCGGGTTTAGTCTGAAGGCTCCGCTCCTGTTCTCAGTGTTGAGGTGTGGGAACTCGCGCGGGTCCTCCTGCTGCTCTTCAGCTCCacgctgctgctggaggaggaaaCACGTGGTGGGGTTCAGCAGTCGCAGCTACAGCGCGGGCTCGGAGGTGGTGATGGCGGAGGAGGCGAAGAAGCTGGCGGCGTACGCTGCTGTGGACAACCACATACAGaaTAACCAGATAGTAGGAGTGGGGAGTGGTTCCACTATAGTCTACGCTGTGGACAGATTGGCTGAGAGAGTGAGGCAAGAGAAGCTGAAAATTATATGCGTTCCTACGTCATTCCAGGCTCGTCAGCTGATTCTGAAGcatggcctctctctctcagatttaGACAGACACCCAGAGctgGATGTAGCGATAGATGGTGCAGATGAGGTGGACGCTTCGCTGACACTTATTAAAGGAGGCGGAGGATGCTTGACACAGGAGAAGATCGTAGCTGGTTGTGCCAAACACTTTGTCGTCATTGCTGACTACAGGAAGGACTCGAAGGCACTGGGGCAGCAGTGGAAGAAAGGTGTTCCAGTAGAAGTGATTCCCATGGCCTACGTTCCTGTGTCCAGGACTATTGCCCGCCGCTTTGGGGGGGAAGCTGTGCTGAGAATGGCCGTCAGTAAAGCGGGTCCTGTGGTGACTGATAACAGCAACTTCATCCTGGACTGGAAGTTTGAGCATGCTCAGAACTGGAAAGAGGTCAACACTGCCATCAAAATGATCCCAGGTGTGGTGGAGACAGGGCTGTTTGTGGGGATGGCTGAGCGAGTTTACTTTGGGATGGAAGATGGAAGTGTGAAGATCCGAGATCCTCCTGTTAACTGAAGGGGAACGAGGAGAACGCCTTTTCCCGCCTGCTGCAAAGACAAGACCAGCCTGACACCGCAGTGCCAGTAGAGTACACACACTCGTGCAGCTCATGCGTGCCATCTACTGGAGAtaactactacttctactggGAGAGAGACATGCAACCACAACATTTCCTAATATCTGATGAAGGTTTGAGTGTATGAAAAGCAGATGTGTACGCATTCACCATGTCATACACCTCGTCTTTCCTCTCTATTTTGTTTCTCGTAGTGTTGTTAACCACTCTGTTACTGACCCTGTACTTAGGGTAAATCTAAAGCTGCTAAACAGCTTGGCCTTCTGGCAGCCACAAAATTAAGCCTAGTCTAGgactaaatcatttaaaaacatttattagttGAAACTAGACCTTTAAACCTTTAACCTGGTGAAATGGCTGTTACTGTCTGccttctgtttgtgtgtgttttttctttactgtctcAAATTTTTTGATTCTTGTCATTTCTGCATGTCTCTACACACTTTGAATTTGAAGCCATTTCTAGATGTACTTTGATCTCTGTGCCTCATGCATCTTTCACTTTGTTTCGCTTGGTTGTTGCCTTGTATTTCAACACTTTTTGTTATATTGAACCAAAGCATGACAGTGGTGGGAGATTAGCTAAATTTAGCGCACACACTGCagttaaacacttttacacatttaaaggtgcatggatttcttttttatttttctctgcaTTCAGACCTCATTAACGGTATGGACCAGTACCTATAATCAGtagatttatttacatttaagtgTCCGTCTCTCAAGTGTCAGATTAATACCTCTGTTTACAATTAGGCCACtgttttacatttctttcacaTTTCAATAATAACATGTTAAGGTTTATATCAAAACAATCAAATGAGCAGATGCAGTTTTGGCTCTTTGGAGCGTTGAATGAATGTAACCACAGTTTATTTCAGATTGATCAGTGTTTTGAGCTCAGATTTCagggaaaaaatgaagaaaaatgtgATCTTGAAAAAACATAGTACTACTAGTAATGCAGTAGTATTGGGTGTGTATTGGGTCTTATGaatatttgatgtaaaatgAGAGGGTCAGTATTTTGGATGTTACAGCTAGCTTTGATCAGATAGAGCCACAgatttgttaaaaatatatacagtacagagcagCAGCCTTGTCTGCCTATGTATGGACTGTATATGCCAATTGATTCAATTCAATTTGTACAATTCGTATTTTTCTTTGATGTGCCTATCAATCTCAACAAACTGTTGTCAGGAATTTACAGTAGCACAGGTTTCCAGCAACCTGGCTTAACTCAACCCAAGTGATCAGGCCTTCTGCTCCTTTATGTTCTTAAGAGATGTTTGTCTTGTGTGACTTTCTAATGAAGTCACTGTGACCTATGACAACACCAGCTTTATGTTGACAATGTTTCTGTACCAATACTACTGTGACATTACGGTTTGGATTAGCGAATGGcattctttattgttttaaagaCCAATCTTGCATTAAAAGAGGACCAATCAAATAAACAAGACTTGTggta

Function

GO:

id name namespace
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0004751 ribose-5-phosphate isomerase activity molecular_function

KEGG:

id description
K01807 rpiA; ribose 5-phosphate isomerase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297715 lncRNA upstream 68967 26202229 ~ 26204872 (+) True G219404
TU297675 lncRNA upstream 326495 25947009 ~ 25947344 (+) True G219374
TU297668 lncRNA upstream 372970 25900643 ~ 25900869 (+) True G219367
TU297550 lncRNA upstream 466820 25747231 ~ 25807019 (+) True G219286
TU297544 lncRNA upstream 581322 25632476 ~ 25692517 (+) True G219282
TU297737 lncRNA downstream 102798 26386913 ~ 26387761 (+) True G219416
TU297729 lncRNA downstream 178593 26462708 ~ 26474262 (+) True G219410
TU297725 lncRNA downstream 188514 26472629 ~ 26474304 (+) False G219410
TU297754 lncRNA downstream 379306 26663421 ~ 26663641 (+) True G219432
TU297755 lncRNA downstream 383936 26668051 ~ 26684245 (+) True G219433
XM_022684932.1 mRNA upstream 4144 26143357 ~ 26269695 (+) True slc4a11
XM_007230884.2 mRNA upstream 148227 26089983 ~ 26125612 (+) True c25h20orf194
XM_007230888.2 mRNA upstream 187689 26080829 ~ 26086150 (+) True LOC103044529
XM_007230887.2 mRNA upstream 187689 26080873 ~ 26086150 (+) False LOC103044529
XM_007230911.3 mRNA upstream 255287 26014323 ~ 26018552 (+) True LOC103023829
XM_022684933.1 mRNA downstream 1662 26285777 ~ 26331700 (+) True eif2ak3
XM_022684934.1 mRNA downstream 51485 26335600 ~ 26469671 (+) True atrn
XM_007234673.3 mRNA downstream 408038 26692153 ~ 26720305 (+) True adss
XM_007234678.3 mRNA downstream 543233 26827348 ~ 26977774 (+) True LOC103024575
XM_022684946.1 mRNA downstream 809983 27094098 ~ 27181917 (+) True cep170
TU297390 other upstream 971252 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 1101596 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1431306 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2210051 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2565596 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 941177 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 946042 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 946044 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 946045 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 946045 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile