RNA id: XM_007230888.2


Basic Information

Item Value
RNA id XM_007230888.2
length 1148
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC103044529
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26080829 ~ 26086150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTGGCACCCACCCCATCCCCAGCCCCAacctactgtatataaactgaAGAAGGTCTCTGGTCTCCAGAGTAGGCAGAAAGCAGCTTTTCATCATGGGTTTTCTGCGGCTGTTTTTTACCTCAGCTTTACTCTATGCATCACTACTACCTGGTGACTGCATCACAGGAGGTAAGGAGGCTAAAGCACACTCTCGCCCCTACATGGCCTCGCTGCAACTGGGAGGCAAACACCAGTGTGGTGGATTTCTGATCTCCAGCCAGTGGCTCATGAGCGCTGCCCACTGCTTCCAGGACGACACAGGTTTTAAGGTGGTGTTAGGAGCTCATTCAGTATCTCAGCCAGAGGACACCAAACAAACCTTCGACATCGCCGCCTACTATCCTCATCCTGATTTCAGCACAGAGAACTATGACAATGACATTGTTTTGGTGAAGCTTAATCAGCCAGTCACAGAAACTGCTGCGGTGAAGCCAGTGAAGTTCCAGCAGGCTGGTGGGACTGACCCTGCAACTAATGCAGAAGTGGACACTGCAGGATGGGGTGCCAACAGCTGGGGCCAGAGGCTAGATCAACTGCAGGAGCTGACCATTACCATGTTGCCCAGACATCGCTGTAACAGCTATGGTGTGGCCTTCACAGACAACATGTTCTGTTCCGCCAAACCACGCATGGACACCTGTGATGGTGATTCTGGTGGTCCTCTGCTCTACAATGGTATTGCAGTGGGGATAACTTCAAATGGAGGAAGGAGCTGTGGTTCCACCAGGAAGCCTGGACTCTACACTATCATTTCTCACTACAGCGACTGGATCACCAGCACTATGACCAAATAGCATGTCAGCAGATTTTTTCATAAAATGAGCAGATCTGTTTTTATTGTGCTATCTGAATAATTCTACGCACATTATATCTCTCACATTCAAGAGCTTTTCTTATAACTGTCTTTGTTGTACTGTTGCACATTTGTTTAATGAGCTTATAGTCTGAGTTGATCTCAGAGTAGATTTTTTTATGAACCAAAATAAAGAATGCATTCATTCTtgggtatttttatattttttcctttttccattatatatatgtattttctgtttgcattatatatatgtattttgctgcaatacataataaatgtttataaacaca

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K01334 CFD; complement factor D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297675 lncRNA upstream 133485 25947009 ~ 25947344 (+) True G219374
TU297668 lncRNA upstream 179960 25900643 ~ 25900869 (+) True G219367
TU297550 lncRNA upstream 273810 25747231 ~ 25807019 (+) True G219286
TU297544 lncRNA upstream 388312 25632476 ~ 25692517 (+) True G219282
TU297507 lncRNA upstream 635330 25445271 ~ 25445499 (+) True G219271
TU297715 lncRNA downstream 116079 26202229 ~ 26204872 (+) True G219404
TU297737 lncRNA downstream 300763 26386913 ~ 26387761 (+) True G219416
TU297729 lncRNA downstream 376558 26462708 ~ 26474262 (+) True G219410
TU297725 lncRNA downstream 386479 26472629 ~ 26474304 (+) False G219410
TU297754 lncRNA downstream 577271 26663421 ~ 26663641 (+) True G219432
XM_007230911.3 mRNA upstream 62277 26014323 ~ 26018552 (+) True LOC103023829
XM_007230897.3 mRNA upstream 396818 25642553 ~ 25684011 (+) True letm1
XM_022684927.1 mRNA upstream 396818 25642553 ~ 25684011 (+) False letm1
XM_022684928.1 mRNA upstream 396818 25642553 ~ 25684011 (+) False letm1
XM_007230901.3 mRNA upstream 396818 25642553 ~ 25684011 (+) False letm1
XM_007230884.2 mRNA downstream 3833 26089983 ~ 26125612 (+) True c25h20orf194
XM_022684932.1 mRNA downstream 57207 26143357 ~ 26269695 (+) True slc4a11
XM_007230877.3 mRNA downstream 187689 26273839 ~ 26284115 (+) True LOC103042087
XM_022684933.1 mRNA downstream 199627 26285777 ~ 26331700 (+) True eif2ak3
XM_022684934.1 mRNA downstream 249450 26335600 ~ 26469671 (+) True atrn
TU297390 other upstream 778242 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 908586 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1238296 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2017041 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2372586 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 1139142 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 1144007 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 1144009 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 1144010 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 1144010 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile