RNA id: XM_007236406.3


Basic Information

Item Value
RNA id XM_007236406.3
length 3949
RNA type mRNA
GC content 0.50
exon number 7
gene id dcaf10
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24447813 ~ 24457455 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGCGCTGCAAAACAGAACCGGAAACACGTCACGTGTTGTCTCTGCTGTTGGCGGTGGTCCGGTGTTTTGGTTAATGGGTCTGTGCGGGGTCTGTGGCTGTGGCCCGGTTcgctgtgcgtgtgtgtagtgGGGGCTTAGTGCGGGTCCGCCGGGGTGTCCGGCGGGGCTGTGCGGTGAAGCGGGGCCGGGCTCAGGCCCCGAGTCTCCCTCCGGAACTTTCCACTTCAAAACGGCTCCGCCGCCGCCACAATGAGCTCGGGCCAGCCGAGCGACAGCAGCGAGCCGGAGGAGCCGCGGGGCGCCGGAGTCCGCCACCTGGACGAGCTGCTCCGAGAGGAGGAGAGCGACAaccaggaggaggaggaagaggaggaggcgaGCCGCTCCAGGCCGCCCTCTCCGCCCCCGGAGCGCCGCGGGGCCCCGGACCTCGACTCCGCCGGGGAGCACGCGCCTGGTTCGGCGTGCAGGAGCGCGGGGCTCTGCGACTCGCTGTTCTCGTGGCTGTGGAAGCGGACAGTCCGCAGAGGGCCATTCGTAGATCCAGCCCGCGATAACTTCCGCACCATGACCCGGCTTTACTCGTCCATGAGCCCCGCCACAGACTCGGTCAACCTGAGTACGCAGACCCACGGGGCCGTGTTCAACCTGGAGTACTCCCCGGACGGgtCAGTTCTGACTGTCGCCTGCGAACAGACCGAGGTGCTGCTGTTCGACCCTGTGTCATCCAAACATATCAAAACACTGGTGGAGGCGCACGAGGACTGTGTCAACAACATCAGGTTTCTGGATAACCGGTTATTTGCTACTTGTTCTGATGACACCACCATTGCATTATGGGACTTGAGAAAGTTAAACTCCAAGGTGTGTTCGCTGCATGGCCACGCGAGCTGGGTGAAGAATATTGAGTATGACACGCACACTCGCCTGCTCGTAACGTCTGGCTTTGATGGGAATGTCATCACCTGGGACACCAATAGGTTCACAGAGGATGGCTGCCCCCATAAGAAATTCTTTCACACACGGTACCTGATGAGAATGCGTCTAACTCCAGACTGCAGTAAGATGCTCATCTCCACTTCCTCTGGTTACTTGCTCATCTTACATGACCTTGACCTCACCCAGAGCCTAGAGGTTGGCAGCTACCGAATTCTGCGGGCTCGACGTGCCCCACTTAGCACAGAAGGATCCTCGACTGGCTCAAGGACTGGAGGCTCTCGTCACGTCAATGACAGCAAGTTGCATCCACACAGAGAAGgtTTATCTCCCAGAAACAGTCTGGAGGTTTTGACCCCAGAGATCCCAGGTGAAAGGGACAGAGGAAACTGCATTACGTCCCTGCAGCTGCACCCCAAGGGCTGGGCCACACTGCTACGCTGCTCCAGCAACATGGACGACCAGGAGTGGACGTGTGTGTACGAGTTCCAGGAGGGAGCACCTCCCCGGCCGCCGGTCTCCCCTCGCTGCTCTTTGAGGCTCACACACTACATCGAGGAGGCTAACGTGGGCCGTGGCTACATCAAGGAGTTGTGCTTCAGCCCAGACGGACGGCTCATCTGCTCGCCGTATGGTTACGGCGTGCGCCTGCTGGCCTTTGATGAGCGCTGCGCTGAACTGGCGGACTGCATGCCCGTGCGCACGGCGCTCCTCCGTGAGGTGCGCTCCATCTACTCCCACAGcgatgtggtgctcaccaccaaGTTTTCTCCTACGCACTGTCAGCTGGCCTCAGGCTGCCTGAGTGGACGAGTAGCACTCTACCAACCCCACTTTTagcacacgcatacacacaaacGAACATGGACCGAATCTTCTGGCAGATGGTAAGGAGAAGCTAACAGCCCTTAAAGGGAGTGTGTGCTTTCTGGGTTCACAGTGTCAAAGTTTGACTGTGGGTTTGTGTAAATGAGTTGGACGTTTTTAGAAGAAGAGTTCATTGAGTGTGTTCATCGTAATCTTTTCTGATTTCTAAACATGTGTGCAGTAATGAGAGAAATAGCCATTAATCTTTACTCACAGTGCATCTCTCTGTTTGGAGTTGCATGCGGAGTGTGAAAGAGTCGGAACCTCAAGGTGCTATAACAGGCTGGCAGGGTTGCGTTTTGTAGTCTTCATGCCTTTTGCTAAGCATATGACCTCACTCCAGTCTTGGAGCCTGGTCTGCCTGTCAAATGCcgacccaccccccccccacccctccgCAGCAGTGTAGTTACTGTCAGTTATGTATGTGTGAAGTAGCACTAAGTGTAAGCAGTGCAGGCTGTTAATAATGTGATGGATGGAGTTTTCTGCATTTTGCCAAAAgttgtttttggtttgtttttaaagcagcacCGTATTCCCACTCGAGCTCTAATAAGAGCTGCTGTTTCCCTATTTCTTACTGGCATGCTGTTTTACGTTTGAAAGGCAGATTTGCCTCCTGTGGACACTAAGGCTATGCCAAAACAGTAAgtgaaagtggcccaaatctgatttccCCAACAAATCTGATGCTTACTTTAGGCTGTAcgcaatatattttaatgtgacCCATATTTGACATTTTTCTTAATAGTTAGCACTGTGCAGCTGACGTGTATGTGCAGagcaattcttaaaaaaaaaaagtttcagttttatcCATGGCAGAACCGTAGGAGCTATGAAGAAGTTCCAGAGGCTGACAACCAGAATAATCACTGAGAATGTGCTCGAgctctctgtaaaaaaaaaaaaaaaaaagcacgtTATTCATCCACAGGCACTCCTGTGGTCTGTGTCCTTAACGTTTTAGCTTTTCTTTTGGCGCTACAGCTGCGTTTTGTGGCTGTGCTctgccattttattagaaacactgagcCATTGCTACAAAATCCCGTTAGCTCATCATCCTGCTAATGAAACCCTCATTCACCGCTGTCGTCCATTTTCTCGTTTACTCACAGCCTTTTGTTTTTCACCTTGAGTCACATTGCCGCAATTCTCAAATCTGAATATcatatttattgtgtgttttctgaCATTTTTTACTGCCTCATAGTTTTCAGATCTGGGTCGCATATGACAGAAAAGATCAGATTCGGGACATTTTTACCTGCTGTGAAACCTATGGAATGTAGCCTAATTAACTCATGTTTTTGGGATATAATTTGTAGATAGTTTAAGCAGAACGCTTGTGCGCATGTGTGCCTCAGTATGCGTTTGAGTATGTGTGTCTAATATAAGATAAGCTAGCTGCAGGTAATTGATTCTTggttgaaagagagagagagagagagagagagaaaggtgatGAGCCGGTGAAGAGGTCCTCCTCCTGCTGTCTCTCTTTAAATACACGTAAAcacatgcgcgcacacacacaaacaattaaCTTATAAACTGGACAGGGACAATCAACATTGTTGCCTAAACCTGAAATCCTCTGGCAGATTGTGTTTTTCATGCCACCTCAGAtgaatgtttgtatgtatgtatctatgtacGTATGGCTGGCTGGATGGATGTAtctatgtgtgtttgtatgtatatatgtatgtatgtataggtgtatgtgtgtgtgtgtgtgtgtaagcacgCTGACTATGGACAGTTCAGAAGCACAGCTATGAGATTCTAAGCGCTGCAAAGACTGTGGGAGACTGAGCTTTTGATGCACCAGGATGTAATGGTTAGATGAGTGTTTTTTAGACTGCTTGGTATCTTAATTTCGCCTTTAAGAAGAGACACACAGAGGATGGTCAGTTCTTCTCTTACTGGCAATGTTTGGATCCTGCTCATGTTATTCAACATGCGTAACATCTGGAAAGAGGGAAATAAGGAAAAGGGCCACAGAGGGATAGAACATTCCTTTGTTCAGCTGTGCTTTCACCTGCTCAATCACAAAATGATTCATGTTAGTACTAAAATACCACTAAGGATGCAGagattcaaataaataaagagttttttttcacTTGCTA

Function

GO: NA

KEGG:

id description
K11802 DCAF10; DDB1- and CUL4-associated factor 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296948 lncRNA downstream 277039 24167395 ~ 24170774 (-) True G218829
TU296939 lncRNA downstream 310818 24134185 ~ 24136995 (-) True G218820
TU296908 lncRNA downstream 374679 24070915 ~ 24073134 (-) True G218793
XR_002651936.1 lncRNA downstream 392691 24054267 ~ 24055122 (-) True LOC111195998
TU296879 lncRNA downstream 421924 24022837 ~ 24025889 (-) True G218779
TU297071 lncRNA upstream 42218 24499673 ~ 24507296 (-) True G218927
TU297073 lncRNA upstream 52190 24509645 ~ 24509912 (-) True G218929
TU297074 lncRNA upstream 53919 24511374 ~ 24515823 (-) True G218930
TU297076 lncRNA upstream 56791 24514246 ~ 24583080 (-) False G218930
TU297085 lncRNA upstream 68809 24526264 ~ 24527579 (-) True G218938
XM_007236404.3 mRNA downstream 19514 24405907 ~ 24428299 (-) False LOC103039233
XM_022684902.1 mRNA downstream 19548 24405907 ~ 24428265 (-) False LOC103039233
XM_007236402.3 mRNA downstream 19548 24405907 ~ 24428265 (-) True LOC103039233
XM_022684900.1 mRNA downstream 46348 24328083 ~ 24401465 (-) True LOC103038918
XM_007237744.3 mRNA downstream 192674 24137822 ~ 24255139 (-) False lzts2
XM_007236405.3 mRNA upstream 1876 24459331 ~ 24462707 (-) True pomk
XM_022684907.1 mRNA upstream 9725 24467180 ~ 24472883 (-) False LOC103040598
XM_007236407.2 mRNA upstream 9725 24467180 ~ 24472883 (-) True LOC103040598
XM_022684912.1 mRNA upstream 17499 24474954 ~ 24483949 (-) False LOC103041609
XM_022684911.1 mRNA upstream 17499 24474954 ~ 24483949 (-) False LOC103041609
TU296881 other downstream 390936 24055525 ~ 24056877 (-) True G218781
TU296808 other downstream 590306 23850963 ~ 23857507 (-) True G218720
TU296561 other downstream 1601608 22844833 ~ 22846205 (-) True G218545
TU296239 other downstream 2391320 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 2592672 21851372 ~ 21855141 (-) True G218240
TU297852 other upstream 2015173 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 2281349 26738804 ~ 26757592 (-) False zbtb18
TU298086 other upstream 2369573 26827028 ~ 26827527 (-) True G219671
TU298422 other upstream 3786830 28244285 ~ 28302408 (-) False epas1
trnai-uau_61 other upstream 5010820 29468275 ~ 29468368 (-) True trnai-uau_61

Expression Profile