RNA id: XM_015602442.2


Basic Information

Item Value
RNA id XM_015602442.2
length 1494
RNA type mRNA
GC content 0.48
exon number 4
gene id ap5s1
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24794890 ~ 24798599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgattccctatgtgtttcttcatagtctggaggacttcagtattcatttatactgCAGGAAAAACTAAACGTGGTAGTGTCAAATCACGGCTTTTTTAGCTGAATTTGGAGGGAAAACAGCGAACCTGGCAACACTGCGGAGGGCGGCTCTCAGTCACactCAGTGATGGTGGTGTGTTTTCTGATCCACACTGTGGGGGCTGTGGGCGCTCTGTCCCCCTGTGAGAGTCGGGTTCTGTACTCTCGGGTTTTCggagtggaggaggaggatgaggagctGAGCGGAGAGCTGGAACCGGAGAAGAGGAGACTGGCTCGAAAAGAGAGACTGGGGGTGGTGGCGAGGCAAGTGAGAAGTGCGGTGTGTCTGAGCCGAGAGGCGTCAGGCAGCGTGTGTGTGGAGGCTGTGCTGGGTGAGGAGGCCGTGGCCCTGGGTGAGGCAGAGTGCGGTGTGTTGTCTTTGGGCCGCGGGGAGCCGTTTGCAGGGCCGAGCGTTGCGCTGTGGCTGGGGGTGCAGGCTATGGCCTTCACTATGGTGTGCCAGCCACATGAGAACCTGCTGCTGGCGGAAGGAACCCTGCGTAACCTCACCCGCCACTGCCTGGAGGAGCTGCGCCTGCTGGGAACTGGCAGTGAGGTGCTGCTAAAAAGTGACCGGGTAGATGCAATGCTCCAGAGACTCCTTCCTCACGGACAGCTCCTCTTCCTCAACAACCGCTTTGCTCAAAACTTGGACAAAGAGCTGTCCAGCTACATGAGCAAATGAGACACCTGGATCAGAGCTATATCACCGGTACAGTGGGCAGAATAAATCAGGTGTTTTGCAGAGCGACTTCAAAACTGGCTTGTGATGTTTTACAAGACGCGAATGAAGAGAGACAGTTCCGTCCAGAATATCCGAAAAAAAGAATCTGAAAAATTCCTTTTGAAGACTGAAAGAAAGTGTTTGAAAGATTGCACCTCAAAGAACTATCTATGCCCAAATGGTCTTCAGAACTGTTTGAAGGGCTGTGGTTGAAGGTTTTTGAAGCAAATTCTAAAGCGTGTTGTTTTTCGTTTGGACAAGTGTTAGATAATAACAGAAGCCTTAAGTGAAAATACAGAACAGAGATCTTCTGATATTCTAAAAATACGTTGTTACATTCAGAGCGGGTGTTTGTGGCACGTTCAGGCGTGAAATAAGCAGAGTGTTGTGTatgctgtgtgtatatatatatatatataatatatatatatatatatattatatatatatatatatataaacgtgtatatgtatgtgtgtgtctgtctcagTGTGCAGTGGAAATCACCTGTTAGTCTCTGATCCTGCAGTCTGATGTGTTGTTGTTCGAGGAGCCAGTGGGTGGCACTGTGTTGTGGTCTTCTGAGCTCTGGAGAACCTCCCTTTGAAGCACAGTTACCAGGGTAACACTTCATATCAAATAGTAAGGCTGTGTTACTTCAGAATCTAATAAATGGGATGATCAACa

Function

GO: NA

KEGG:

id description
K19024 AP5S1; AP-5 complex subunit sigma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651944.1 lncRNA upstream 2069 24790077 ~ 24792821 (+) True LOC111196006
TU297100 lncRNA upstream 153843 24589310 ~ 24641047 (+) True G218948
TU297063 lncRNA upstream 224158 24567317 ~ 24570732 (+) True G218920
TU297025 lncRNA upstream 315668 24474824 ~ 24479222 (+) True G218893
TU296989 lncRNA upstream 328023 24465704 ~ 24466867 (+) True LOC103046104
TU297260 lncRNA downstream 148125 24946724 ~ 24947071 (+) True G219067
TU297262 lncRNA downstream 210542 25009141 ~ 25009529 (+) True G219069
TU297267 lncRNA downstream 242638 25041237 ~ 25041789 (+) True G219074
TU297295 lncRNA downstream 285858 25084457 ~ 25084856 (+) True G219102
TU297338 lncRNA downstream 335354 25133953 ~ 25138947 (+) False G219141
XM_007237254.3 mRNA upstream 7550 24779609 ~ 24787340 (+) True cdc25b
XM_022684969.1 mRNA upstream 116777 24658431 ~ 24678113 (+) True LOC103045503
XM_022684970.1 mRNA upstream 116777 24658431 ~ 24678113 (+) False LOC103045503
XM_007236421.3 mRNA upstream 137242 24627549 ~ 24657648 (+) True LOC103044475
XM_022684917.1 mRNA downstream 363128 25161727 ~ 25174708 (+) True dapp1
XM_022684918.1 mRNA downstream 386035 25184634 ~ 25192379 (+) True rrh
XM_007237999.3 mRNA downstream 427842 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA downstream 427842 25226441 ~ 25241001 (+) False metap1
XM_007237991.3 mRNA downstream 512244 25310843 ~ 25315607 (+) True LOC103043156
TU296854 other upstream 731102 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1086647 23696577 ~ 23708243 (+) True G218651
TU296278 other upstream 2576030 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 2576030 22218117 ~ 22218860 (+) False G218351
XR_002651939.1 other upstream 2698238 22060967 ~ 22096652 (+) False mark3
TU297241 other downstream 43703 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 363343 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 458351 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 2426693 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 2431558 27230157 ~ 27236611 (+) False LOC111196018

Expression Profile