RNA id: XR_002651979.1


Basic Information

Item Value
RNA id XR_002651979.1
length 6875
RNA type misc_RNA
GC content 0.43
exon number 3
gene id LOC103038412
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32613474 ~ 32677285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACAGGAACTGCAAACAAATAGTAAACAGCTAGAAACCCTCCTCAAAGTAttttactgatattttacagggattttttacagttttggtATCTAAgcaaacttttaaaatgttgttttacttAGAGTTTTTACATGCGAAATATCATAGAACAGAAACTAGCATTATGTGGATTTTGTCGTGTCCTACGACAACTACaaaatgctgcactgacttgtgggatatgtgtgtggggcctcCTGAAGTCAATGTTAATGTGATATCTGTCACTTGTCTGTTTGCTCAGACAGCAACCTACAAGTGTGCAGAATCTACagacccagctgcaacatctgttgGTTAATGCGCCTCAGGATTTAATTATTACCATATAAATATTACCAACCATAATTACCATAACTCCAATGCTCAGTCTTTCAACTTATTTTCTGCACCCAAAGCCCCTTCGGAGGCTTCAGAGAAGGCTAAAGATTGCACAAAAAGAGAAGGGAAATCAATCAGGATCAAACTGTGCACAAGGCCAATGAATTTTAAGCCTGCATTGGAATCAGGAAGGCCTTTGGTGTTGCTTACTCAATTTGTTATCTGAGAGCAGTGCAAATTGGGTGGGCACAGAAAGGTCAGACCCAAAGCAACACAGACTGATAGTTGCGCTCCCTTTGAAACTCTGCCGCTTGAAGTGATGCCATCCCCCTTTCAGCCATCATTTTCACTTTTCTCCATCGTGGGCCGGCCGTGTGCCAGCCTGCCATTTAAACAACTACAGACACAACACCTGGAGAAATCACTAACAGAACATGCTAATCAGACTCATCAGTCCCAAAAAGCAGCATAAGTGGTTTGTTCTTTCCAAAAccttaattacataattaaatctttttttttttcatttatccaCTTAATTTGGTGCTTCAGACTGCCAGCAATTCCCACTGGGCTGGCCTGTCTTTGCCCCCCTGAGTGCAATGCAAGCAGTGACTTTTTGAAATCTCTTAATGAATCACAAAAAGGCATTTTGCTGTGCGGCTtgaatatacactgctcaaaaaatacaacacaacaacacaacgTATTTCCAAGTCAACCACACTTCTGTAAAATCCACCTGTCCAGTTaagaagcaacactgattgtgaatcaatttcacctgctgttgtgcaaatggaacagACAGGAACTTCCACATGGTAACGTTTGCTaaactgtgattctttgctTAATGTTACTTGCCTGTAATGTTTTTGTtgcttaatttactttattagcGGTTACCAGTTGTCAAGTTAAGAATAtcctataaaaacacaatgttattttacaaatgtagttttatttaaaagtgttttcctTTGCCTATAGGTACTAAAGCTGTATTAAAGCTTTTTATAATTGTCAGCAACTCAACATGCCTAAACATCATGTTTATCTGCATGATTCCAGGTGGAATTATTTGGTTTTGTTGACTAAGTcagcaaacaaataaaacataatctggTATGGTTTATCTGGGGGGACATTAAAAGTAAACCTTGTATtagtttgctgtttttttaaagcagtgttgTTTCTTgacaaaaatgcttttttcagAGAAAACATTTGCACTCTTAGCACTGATGCGAGCCTGTCGCATCCTTCTTGGCGCATTTTTGGAGAGAAGCCCCTCCCTCGCGGCTATTGCGCGCTgcgttgatttatttatttattatatatatttttgggcaCCCGTTTTGCTAATCCCTCCCCGTGTGCTAGGATTGGCTAATGCATACTCATAAGAAGTCAGCCGATAATCCGATAGGCTATCTGCTTCTGAGAGTGAACaactagccaatcagagctcaGGGAGGTCGGACTTGTTGTAATACGGGTAAGGAAAGCGCTCACACGGGCTGGGCAGCCAACACCACCCTACTGACTGTTTCTCCGGTGTTTTAATTGTAAACAGAGCTTCGCTGGAGTTTTCTGTTCTGTTGGGAACTTATGTAAAGGGTTGAAACCTGGCGAGAGattcattaagtttttttttggcaaagcCACACTGCATGTAAGTGCTGTTTGGGACAGGCTGGACAGGACCTAGTACTCACTACCACCATAGTGCACGAGGACAGTTAAGTGAGCATCGCGCTTAACGATTCAATTTCAGTCTCAAATTTAACAATAAGAACAAAGAAAGAAGATCTAACGCAAAAAGCAGAAAGATATGGGATGAACCCGAAATCATTCTCCAGCGCTGTTGGATGTGAACTACAGTATATGGATTATGAATTTACCACCGGTAAACCGATTTCTATCGGATGCTTCTTCGTACCCGTCTGCCTCCATGAAGAAAACAGTGAAGCAAAGGACTCCACAACTGCACACCAGAGCCTCCTTttgaacatatatatttatgattataCACAGCCTATCACGGAGTAATAATTGcacttatttattctttatttgtcGACTTTACTCCATGTCCCGTTGTCCTTAGGGAGCGCGCATCCTTCATCCCATACGGATCTAATGATGCCCGATCTGCGCCTGTTCAGAACGCTCCCTCCGTTACTACAAAacgctctgctctgctctagAACCCGAACTCCAAGAACCCTCTAGAACCCGAAGCGAGAATTCAGGTGTTAACCAGCCCCACGCGCTTTTCTCTGTCTGATTGTTTCTGCCACTGTAATGTCGGCGAGTAAAATTGATGCGGTTCCTGGGACGGGCGGTTTGGTGCAGCGACCCGAAGGCTGAGCCAGGCACGCTCTTCTTCATCATCACACACAATGGACAGATCAGCGCGCGCTCCCGCAACCTCGGAAAGAAGAAAagcagatattattttttttaagaaatacgtATAGCAATGAGTTTATACGTGAGCGCGTGCGTGCTAATTCGTGAATTACTCATAGGCTAATGGGGCACCGCGGGACGCGTATTGGGACAAGGGACTTTCTTTTTCCACTTGAGGAATCAGGATGGATGGTTTATGGCTCTACAAGTGTTCcgcagttctctctctctttacactTCTTTTTCTCTACGCATCGAAATAAATATCCCAGAACCGCGGGATCAGTGATTCGCGCTCCGCTGGAGAGTGTCGCGCGCCCGCTCGCGTGCAGCGGGAGCCTCGTCGATGTGTTTGCCGCTGTCCGCCGCCGCGCTGGTGCTGAAGTGTAGATGATGTCCGGCCAGAGGCTGCAAGGCTGCCGCTCCCTGCACGTGAACGAGGACAGCGGGCGTTTCCTGCTGCTGGCCGTCCTGATCCTGCTGTACCTGCTGTGCGGCGCCGCGGTTTTCTCCGCCATCGAGAGGCCGTCCGAGCTGCGCGCGCACGGCCGATGGAACCGGACGCTGCACAACTTCAGCGATGCGTTTAACGTGAGCCTGAAGGACCTCAACTCGTTTCTGAGGGAGTATGAGAGCGCTGTGGCCGCCGGGATCCGCGCCGACGCTCTCCGACCGAGATGGGATTTTACAGGCGCGTTCTACTTTGTCGGAACGGTCGTGTCTACAATCGgTTTTGGGATGACAACCCCCGTGACGGTGGCGGGCAAAGTGTTCTTAATCTTCTACGGCCTGCTTGGATGTGCGGCCACCATTCTGTTCTTCAATCTCTTTCTGGAGCGTATCATTACTCTGTTAGCTGTGGTGATGAAAGCGTTTCGGCTGCGTCGGTTGCGCACCAGCGGCCTTCTTCCACCGGGGATATGCCAGGACTTTGCAGCCAGCAGCCTGCCAGGCTGGAAGCCTTCTGTCTACCATGTGATGCTGATCTTGGGTCTGTCAGCTATCATCATTTCCTGTTGTGCCTCAGCCATGTACACCCCTGTAGAAGGCTGGGCCTACCTTGACTCCCTGTACTTCTGCTTTGTCACCTTCAGCACTATCGGCTTCGGAGACCTGGTCAGCAGCCAGAATGAAGCCTACAGCTACCAGGGCCTGTATCGGCTGGCCAACTTCTTCTTCATCCTGACGGGCGTCTGCTGTATCTACTCGCTCTTCAACGTCATCTCCATCGTTATCAAACAGGTACTGAACTGGATGCTGGGTAAGATGAGTTGCCTTTGCTGCCAGCGTTGCAAGGCTAACGCTTTCTTAGGACGACGCAATGCTATCCGGCCCGGCTCACGCCTCAGGCAGGGCCGCTTTGGTCGCCCACCAGATGCAGAGGGAAGTGACACGGAGGGCAGGAGACTATCTGGTGAAATGATTTCCATGCGGGACTTGACAAGCTCAAATAAAATCTCACTGGCCATCATGCAAAAGCAGCTCTCTGAGACAGCAAATGGCTACCCCAGGACAATATGTGGAAGCTCGAGGCACAATGGCTTCTCTGGAGGAGTTGGAGCCCTGGGTATTATGAACAACAGACTTGCAGAAACTAGTGACACTAGGTAGAGCCATCTGATGGTTCAGCAGAACAACATAGGAGAGTGGTGTAGCACTCCCCTGTAGGAAAGATTTTCTGTTTCATTCTGACTTTGCCTTGTACAAGAGCTCCAGTGAAACAGCATGATATGCATGAAGTATTTCGGATATCTTTTAGAGCCAGGGTTGATTCTGGGCTGGTCAGGGAATTTCACTATGACTCAAAATGTCATGGATCTGACCTCAGTTGAGTAAGCAATATGAGCATGTCGAGGAGTTGCTGTGAGGCTATCTGCTTCCACGTGTTAATGGGTTTAATTGTTATGTAGCCTGAGGCTCAGAGACCAGGTCTGCATTATTACCTATAACAGCTGATCTACAATTCCTCTGGTAGGATGGAATTAAACATTGCTTGTTTGAGTGACATTAAGAGGTTAAGCAATGTGACATTTAACAGCTCTGACCTGAGGGAAGAGACAGTGTGACATTTACAGCACATGAGACCTGCTGATGTCATCGGTATGGGAATGAGACATGTCCAGTTTGAGCGTCCAACAAGTAAAACGTCCAACAGTCATGGCTGTGGTATGCCAAGTCTCGGCTGTAgctctgtttttaatttgtttatttgtttctgtctattcaattcaattataTGTCCATTACATGACCTAGAGTAAAATAAGAGACACATATCATTTTTATCATATCTGATTTTGATCTCCTACTCAGTGTTAGACTCACaatacaacatttttaatactgtaattctgCGATACttcatatatcacaatacaattctCTGCGATACAATACACGGCATCTGTGTAACTAAAGAGGATGAgattcaaacaaacaaacaaatatcaggaattatgaatttattggtgtcagtttcacagaaattcacaaccaatattctttatgtaggtttaccctattcttttgattagcgccaccacatggagtaatgaagcagtaactttcaCAAGTCTAATTTGGATCTGATACGTTCACATTATAAGCCACATTTCTCAAATCAAATTTTTTGCTCATAttggatttggctatcttgacagtttacattcacaaatgtaagtgacctgtatctgtgtgtaatgtgaacgaagcTGTCCCTGAAACACCTCACATGCGCACTCGTatacgtgtataaacgtctccttcttcaccaacaacaataaaacgttatatttgagagacgactttataaagagaaatggatgagttagcagctcatatgtggagcatcttttgctggagtggagaaacagcaaacagcaaaggCCAGgtagtttgcttttgctgtttttgcagctttagctgcacagctgcaccaataGATGTGTGAGTACGatagagaagcatgtagcgcagCATAAAAGAAGCAcgaattctgatttgactgttcacattcatgtcgcatgtccttGGATCAGATACTTAGgtccacatatgaaagtgactcaaatttgataaaaaaaaaaacgcatttgGTATGTTCACACAGCTTAGGAAAAATCAGATCTGACACACTGAGCAAAAAAGTCTGATTtaatcacttcagcctggtaatgtgaacgtagccttagttTATCAATATATGATGCcacattatatcacaatattgatatattgtcccaccctcAGTCAGTATTAGCAGTTGTCCCATAGATAGGGCTATAGATTGTGATGGGTTGAAAACCAAATTCAGATATGGTAGAAACACAATTTTAGACTTGTTGCACAAAACAAACCACTATGATTCCAATTAACTTGCTTTTAGCTTTGCTGTTCTAATAAATCAACTCGATCTAATAAGTCTAATGTGACACATCACCTGAAGAGTCTAAACCTGGATTTGTCCCTCTGAGTTCATTCTTCATTCAAAAGCTATATATGATTCATGTTGCCTGCATTATGCTGAACCATAGACTTTAATGTATGCAATTTCCTTCTGGTTGCAAGTTGCACATTTATAAACATAGAttgtacttttatatttatgtaattaatgataaaatccaaactaaacaaaaatgtatccatacaaaaataaaaagaaatattctAAAAGGTTGTGGTATTCTCACTTATTTAGGTGGGTTATGATATAATTGAAATGCAGTCTTAATCACTCATCATATGCATATTAGATTTACAGTCATTTCTTTGGGGGAGGGAGCAAAAATAAGCCTACAACACGGCATCACTTCCAGAGCCACGGGTGTACAGAAGCAGAAGCTAGTCATGCAGACTGCTGCTACAAACAacagtgaaagaatgggtctcaggagctcagtgaacgtTAGACTGGTACAGTGATAGGATGCGGCACCTGTACAACAATCCagtttcctcactactaaatattccatagccagtgatattataacacagtgtaagagactgGGAATGAATCAGCCACAAAGTCGTAGACCATGTGAAATgacagaggcccaacatttgcatgctttaaatgttttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299735 lncRNA upstream 27841 32585343 ~ 32585633 (+) True G220926
TU299725 lncRNA upstream 104291 32502784 ~ 32509183 (+) False LOC103027057
TU299731 lncRNA upstream 118159 32494938 ~ 32495315 (+) True G220924
TU299720 lncRNA upstream 121469 32491723 ~ 32492005 (+) True G220919
TU299717 lncRNA upstream 150553 32461431 ~ 32462921 (+) True G220916
TU299751 lncRNA downstream 7954 32685239 ~ 32685607 (+) True G220940
XR_002651978.1 lncRNA downstream 32613 32709898 ~ 32711625 (+) True LOC111196029
TU299881 lncRNA downstream 42978 32720263 ~ 32720671 (+) True G221036
TU299942 lncRNA downstream 230185 32907470 ~ 32960375 (+) True G221090
TU299957 lncRNA downstream 306156 32983441 ~ 32985180 (+) True G221101
XM_007238446.3 mRNA upstream 93090 32502774 ~ 32520384 (+) True LOC103027057
XM_007238454.3 mRNA upstream 316593 32289852 ~ 32296881 (+) True ntpcr
XM_007238455.3 mRNA upstream 324624 32284577 ~ 32288850 (+) True map10
XM_007247347.3 mRNA upstream 1088131 31522285 ~ 31525343 (+) True c1d
XM_022684463.1 mRNA upstream 1157644 31443031 ~ 31455830 (+) True psap
XM_007237265.3 mRNA downstream 44820 32722105 ~ 32776771 (+) True golga4
XM_015602445.2 mRNA downstream 44820 32722105 ~ 32776771 (+) False golga4
XM_007237266.3 mRNA downstream 44821 32722106 ~ 32776771 (+) False golga4
XM_007237268.3 mRNA downstream 102259 32779544 ~ 32905463 (+) True itga9
XM_022685005.1 mRNA downstream 234496 32911781 ~ 32921578 (+) True LOC111196032
TU299723 other upstream 34922 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 875278 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 1185162 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 1190652 31422752 ~ 31422822 (+) True trnag-gcc_5
trnag-gcc_3 other upstream 1198504 31414900 ~ 31414970 (+) True trnag-gcc_3
TU300211 other downstream 766832 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 1485296 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 2309743 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 2341168 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 3192733 35870018 ~ 35888815 (+) True gclc

Expression Profile