RNA id: XM_007237266.3


Basic Information

Item Value
RNA id XM_007237266.3
length 7333
RNA type mRNA
GC content 0.46
exon number 24
gene id golga4
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32722105 ~ 32776771 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCACGTCGGCTGCATCTGCGCAGTGTTTGCTTTTACCTGCCTGTGAAATGAGAGACGACAACACAGAGCTGCGCAGACTGACAGCGGAGGCTTTCCTCAGGGCCTGAGTATAAGATAATTAACCCTCAGACAGCGGTACCTCACAGCGCTCAGACATgtttaaaaaactaaagcagaagATTAATGAGGAGCAGTCCCCGCAGAGGAGCGCCCActcacaacaacaacagcagcagcaggcccAGGTGAGCTCAGGTGAGAGGCGTGGTCTACACCAAGATGCCCCCTCCACCCCAAGTGACCGAGAGAACATCGTTAAGGCTGTGGGTAGCTCTCCAAGGGGCAGTTTGAATGGAGATGGAGCTGCCTCACCTTTGAGGGAGGAGCAGCAGTCTCTTGCTCAGAAGCTGCAGCAGAGGGTGTCCTCAGTGGAGTCTCTGTTCCGGGGCTCTGCTCGTGTAGAAGGTCTCCTGCGCTCCGGCTCCAGGGAGAGTCTGGTCCGCAGCCCGTCCCGGGACTCCCTCACTCCGCTGGGGGACAGTGACACCCTTCCTGCTTATGACCCCCCTTCTGACatagagagtgaggcagaggatTCGCCCAGCAATGCAGATGCTCTGTCTAAAGACCAGCTCTTACACCGCCTGCACAGGGTGGAAAAAAGCCTGGGAAACTACAGAGGGAAATATTCAGAGCTGGTCACAGCCTACAGGACGGTACAACGAGATAAAGAGAAAACGCAGGCTATTCTCAGCCAGAGTCAAGATAAAGCACTACGGCGAATAGGAGAGCTCAGAGAGGAACTGCAGATGGACCAGCAGGCTAAGAAGCATTTGCAGGAGGAGTTTGATGCTGCTCTAGAAGAAAAAGACCAGATGATCACTGTGTTGCAGACCCAAGTGGCTCTTATGAAGAAACGTCTGCAGGGAGTCCCTGGGGCTTTGGTTTCAACTGAGGAAGAGGCCAAGTCCACCGAGACGAGCCCTGACCTTCAAAATACTGATCAAGTGGACAGCACTGAACTAAATGAAGCAGGGGTCAGCAGTGAGCCGGGCAGTGAGGTGGATATGGAGGTATTGCAGAAGCGAGTGCGGAGGCAGGAGACGCTGCTGCAGCGCTGCAAGGAGATGATCCGCACCAACAAAGAGCGCAGCACTCAGCTCAGCAGTGAGAATGAggctctgcagcagcagctacaGGAGAGACTGCAGGAGCTGGAGAAGATGAAGGAACTCCACACCACAGAAAAGACCAAGCTGATCACACAACTGCGTGACGCCAAGAACCTCATCGAGCAGCTGGAGCAGGACAAGGGCATGGTGATTGCTGAGACAAAGCGGCAGATGCACGAGACTTTAGagatgaaggaggaggagatTGCTCAGCTGCGCTCCAGGATCCAGCAGAGCGTGGCCCAGAAAGACGAGCTCcaggaacagaaagagaaagcagagaaagcAGCATTTGAGGAGCTGGAGCGAGCGCTGGGTGTAGCTCAGAGGGCGGAGGAGGCACGGCGGCAGCTGCAGAGTCAGATGGAGGATCAGGTTAAGCAGGTGGAGCGGGCAAGcgaagaggagaggaagagtctGCAGCAGGAGCTTAGCAGGGTTAAACAGGAAGTGGTGACCATCATGAAGAAATCTACAGAAGACAGAATAGCAGAAATGGAACGCCTGCACTCTGAGGCTTTGGCTGAAAAAGACAAGGAAATGAGAgcccaaataaacagtgcaGTGGAGCAGTGTCGGGAGGAGCTGTTACAGGCCGCTCAGGAGAAGGAGCAGCAGGCCTCTCTGGCTCTGGAGGAAGCAGAATTGCAGAAGGCAGCTCTGCAGGGTGAGGGCGAAGCCAAAGCCAAGGACCTGCTGTTAGAGCTGGAGAGTGCCAGAACTagaatCCTTGAACTGGAAAGTTCATTGGCCAAGAGCTCACAGACTGAGGCCACCCAGTCAGATCACCTATCAGCAAAgatagaagaagagaaaaagagatatgaAGCTGAGATCTCTGTTCTAGAAGAGAAACATCAGCAAGAGCTGGAAAGATCAAAGGCGGAGCAGATGGAGATTTTAAACCAGAAGCACGCTGCTGCTGTGGAAGAACTAATGCTGAAACACAAATCAGAGATTGAAGCCATCCTGAAAGACAAAGAAGTAGAGTTTCAGGCTCACGTTGAAGACATGAACCAAAAAACACTAGAGAAACTGGACGTTAAGCAGACTGAGCTGGAAGCCCTGAGCTCTGAGCTCAGCGAGCTACAGAAGAGTAAACAGCAGCTGGAGGAGAAGCTAGCTGCCATCGATGCAGCCAACATCTCTGCTAAGCAGGAATTGGAGGAAAGACTGAAGGAGGAACAGTTGAAGCATCAGAATAAGATTGAAGGTATAAACCGTCAACATGAGCAATCACTTGGAGGCGTGGAGAACACGCTAAAAGAAGAGTTAGATCATCTGAGATTGATGCTGgaaaagaagaataaagaaaTTGAAGAATGTGTTCAAAGGGAAAAAAGCTTGGAGGAAGATGTCAGAAAGGCTCAACTGAGTGCCGAGGCACAGGAAAACGAAATGAAAGATCTGAGGCATGCTGCACAATGTGACAAAGATGCCCTTACTGAGGCCAGTGCTCATCTTAAAGCACTGAAAGAGGAACTGGACCATTCAAAGGGTCAACTGAAAGAGCTCGAGAAGCGTCTGGAAGCAAGTTATACTGAGTCTCAGGAGAAAGCAGATTGTCTTCAGCAGAAGATTGTTGAAAATCAGGTACTACAGCAGAATGTGCAGCAAGCAGCCACTGACCTGTCTGAAAAAGAGACGTCACATGTTGAAACCTGCAAAGCGATGCAAGAGGAACAGAATCAGTTGAAGAAGCAGCTGGATGAGGAGAGAAATTCCTATGAGAAAAAGATGGAAAacctaaaaaaagaaatggatgGCAAGTTGAAATCCCAAGAGAACAGGATGGAAAAAGTCAAACAGAAAGCCAAAGAAATGCAAGAAAAATTCAAGAAAAAGCTACAGGAGCAGGAAGAAAAGGCCAAAGCAGCGTTAGCCAAGAAAGACGAGGAACTTTGGCAGAAAGAACAGCAGGTGAAAGAGAAGATCCTTAGTATGGCCCAGGCTAACTCAGAAGGCCTTAGCAGTGCCGTGTCTGATTTAGAGACGAATCATAAAGAGCAGTTAGAGAAGCTGAAAGAAGCCCACAGACATGAGCAGGATGACCTTCTGCGTGTTTGGCAGGACAAGCTAAACCAGCTGGAGGAAGAGATGCAGGAGAAACATGCACTTGTTTTGCAAGAGAAAGTACAAGAATTGGAAGACCTGTCTCAACAACTTTCAGGCAGTAGGGAGGATGGGAAAATAGTGGAACAAGAAATTAAGAACCTTAGGGAAGAACTTGCAATGAGGGAAACCACAGTCCAGAAACTTCAAGCAGAGCTCAGGGAAGCTGCAGTGAAGCTGGAGAGTCTTTCTGACTGTGAGAACTTGCTGAAACAGCAGGTGGAGACTGTGGAGAAAAATCTTAACCAGGCCTTGACTGAAAAGAACTTTCTCCAAGACCAGCTCAGTAAGTTTGAAGAGAACAGTAAAGAAAGATTGCACACCATGTCTGAAGAGTTAGAGGATGCACGCAAAAAGCTTAGTGTGCTTGAATCTTCCAGGACGAATGAGGCTGAGGACCTGCAGAGAACCCTTGACGAGAAAGCTTCAGAGCTTCAGGTTAAAGAGAATCAGTTTCGGTCACAAATCGACTCTGTTAGCAAGGAGCTAGAGCAGCAGTGTGAAGGAGCACGAGCAATATTAAACGCTTTAACAGATGAGCTGTGTAATAAAGTGGAGGCCAAAGTCCACGAGCTTCAGAGCAGGGTGATATACAATCAGAAGAAAGTGTGTCATCTTAGAAATGTCATCGTGGCAAAGAATGACAAAATCTGTGCTTTGGAAAAAGAGCTTCAGCAAGCTGTGGAGGAGAAACAGAATATAAGGAGCTCTCTCGACCAGATGACCTGTCAGCTAAATGAAAATTCAGACAACATTAAAGCCTTAACAATGGAGAAGGATTCTTTGCAAAAAGATTCCAACAATTACTCCCAATTACTTTCTGAGAAAGTTGTTTATATAGAAAAACTTGatgaagaaaacaaagaaatatcAGAAAAACTTAACGCAAATATTTTGCATATCAGTCAATTGGAGGGTATCGTCAATGACCTGAAGACCCAGTTAGCGAGTAGCATAACTGAGAAGGAGGAAGCCATATCTCTGCTGAATCAGCAGCACAGTGAGGAGAAGCAACGTCTCAAATGCGAAATGGGGGGAATGGTCGAAagtgcagaaaaagaaaagagctcTGCTCTTGAGCAGGTCGACACACTCAGGAACAAGATGTCTGAGCTGAAGAAGAAAGCCGAATCCAAGTTCACTCAGAACCACAACACTGTCAAGTCTCTCCACAGTAAGATagaggagatggagagacagataGCAGAAAAGGATGAGGTCCTTCAGAGACTCAACGCTAGCATCGACAATCAGtccatcagcaagtctgagatGGACCAGGTGCTGAACGAGAAGGAGCAGAAGGTAAGTGCCTTGACCTTCGAGTTGGACAACTGCATGAGGAGAATCGGTGAGCTGGAGGAAAGCCTTAAGTTGCAGATAAAAGAACAGGAGCGTCTGACGGCTGAGTGGCATCATCAAGAAAGTGTGAGGGAGAGTGAAAAGGCTGAACTGATTCAGCAGCTCCAGCTAGTCCAGGAACAGTGTTCTCAAAGAAGTGGTGATGTTCAGAGAACAGAAGAAAAGCTCCAGTCTTTAGAAAGTGAGATCCTAAATACCAAACAGCAGCAAGGAGACTTTGAGAAGGAAAAGGCAGATCTTCTGAAGGCGAGGGACGAAGCTTTGAAAGCAGCTGAGGAAAGTACAGCTAAAGTTGGTGAACTAAAAAAGAAAGCTGAACAAAAAATCGCCATGATTCGGAAACAGCTGACCTCCCAGAATGAGGAAAAGGAGCAGGTCATCCGTGACCTACAGGAACAACTGGATGGCATCAGGCAGACGCAGGATGAGGGGGAACTGCACATAAAGAGTTTGACGGAGAACGGGAAGATCATGGAGGAGGCTATGAACAACTTAAGGGAAGAACATGTAAAGAATTTGGAGCAAATGCGACAAGATTGGGAATCCCAAAAAGAAAACTCTCTGCAAATGTTGAAGGACACATATGAGGAGAAGTTAGCATATCTTCACAAAGAGGCATCTGCAAAGGATGAACTGGCTGCTGCAAGGAGAGCACAAAATGAAGAGGAGGCTCATTCAAAGATAAAGGAACTAGAGACCAGACTACGTGAATCTGAGGAACAGAAGTCTAAACATAAGGCTGAGTTAACTAGACTTCAATCAGAACTTGTGGAACAGACTGCATTGTTTCAGGAGCTTCAGAAGACTTGTGCGGATCTTCAGATTCAggttaaagagaaagagatcagTGCCATACAGGAAGAATGTTCTGTACAGCAGACAAACAGTTTCTTAGAATCTGTGCCCAAAGAGTCTGTTCTAATGATAGAAAAGGATGCAGACTGGAAGACTGAAAAGGATCTCTTGGTGAGCGAATATGAGACAAAGCTTCAGGAGCTCAGTCAAAGACTGGAAGCAAAAGAGGAGCAGCTTAAATCCCTAGAAAACCTACAGAAGGGACTCGGAGAAGATGATGGCAAATCTCTTGTTGATGGGTCCAAGAGCACCAAGAACAATCTACAGAAAAGTCTGATGGAAGCTGAGAATGAGAAGCAGAAAGTTCAAAAAGAGTTTACCCGGCTACAGAAAGATCTTCGCTCTCTGAGGAAGGAGCATGAAAAGGAGTTGGAATACCTAAAGAAGGAATTAAcagaagaaaatgaaaagaaactaaaACTTGAAATGGAAGACATGGAAATGAAACACAACTCTGCTCTAAAGCAGCTGATGAGGGAGTTTAACACACAGATGgctctgaaagagagagaacttgAGGCTTCAGTAAAGGAGACTATTGAAAAAGCCCAGACTGTGGAAGCACAGCTAATGGAAAGCCACCGTGAGGAGGCCAGTCAGCTGCAAAAGATAATTGCTCAAAAAGAAGATGATCTAAACAGAACTGTTCAACATTATGAGGAAGTCATTCAGAATCGCGAAGAGGAGATGGGTACGCGAGTGTGGGAGGTACAGAAAGAGCTGGAGGAGTTGCAGCAGAGGAGTCTCAGTGGTCCTCAGagCCTTGAGGAGCTTCAGGTCCAGCTTGCTGAGAAGACCACCCTACTGAGTGAAGCCAGGCTGAAAGAGCAAGAGTACCAAGATAAGaTTCATACTCTTGAGGACAAGATAcgaactgtttttaaaaattctgTGGTGACTCATCTGGGAAGCACATACAAAGAACCCTCACACTACGGTGTGGATTCCCTCACTGAGCCCACAGAGTTCGAGTACCTGCGGAAGGTCTTGTTTGAGTACATGATGGGACGAGAAACAAAGACAATGGCCAAAGTCATCACTTCCATGCTGAAGTTTCCCCCGGACCAGGCCCAAAAGGTTCTGGAGCGTGAGGATTCCAGAGTGATGCCTTGGCTCCGGTGAGGTGGAACCGTGCCTGTGCCTGGTCTATCAGAGAGAAGGACagatcctgctgctgctgcttttgctgttgctgctgctacAATATGGTTTAAAGGGGCTAGAATCGCTATTCACTTGACTAATAACCCTTtcctttatgtgtgtgtttgcctgtgtgggtgtgtgaccTGGGAGAGCAGACGTGTGAGTGACAGTGTGAGGAAGGTATTGGGATGATGTGATTGTACAGTTGCTGGTGTAGGttattaaataaactgttaGACCTTGCTCAGATTAGATCCTGTAAGAAAATTATacctttgtaatttattgtttaGATTTTCGGTCCAGGGTAGATGGATTTCCTTGTTCttaaatgtagatttttttatgaatttaagTTTTGTGCAATAAGTATGAATTATGTTTTCTTAAAcgttttatgttctttttcatcttctcttttttcacGATGAGGTGTAGCATCCCTTTAAATGCCCTTTCTGCACATGTGTGTGGATCACTTAGACACGCAGGCTCTTAGTACTTGATTTACTACAGATTTATTTGAACTAATGCTATATTTTCAGGAAAACTGACAAAATACATCAtactgtaaattgtaaattatcACTGGAAAAGAACTTATGAATCTGTATAATAGGGCACATTGTGACTGTTGccacattattacattttaaacggctaataaaaatctatttacagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299881 lncRNA upstream 1435 32720263 ~ 32720671 (+) True G221036
XR_002651978.1 lncRNA upstream 10481 32709898 ~ 32711625 (+) True LOC111196029
TU299751 lncRNA upstream 36499 32685239 ~ 32685607 (+) True G220940
TU299735 lncRNA upstream 136473 32585343 ~ 32585633 (+) True G220926
TU299725 lncRNA upstream 212923 32502784 ~ 32509183 (+) False LOC103027057
TU299942 lncRNA downstream 130699 32907470 ~ 32960375 (+) True G221090
TU299957 lncRNA downstream 206670 32983441 ~ 32985180 (+) True G221101
TU299960 lncRNA downstream 209859 32986630 ~ 32988862 (+) False G221103
TU299961 lncRNA downstream 209859 32986630 ~ 32992463 (+) True G221103
TU299963 lncRNA downstream 209859 32986630 ~ 32987336 (+) False G221103
XM_007237264.3 mRNA upstream 49889 32613474 ~ 32672217 (+) True LOC103038412
XM_007238446.3 mRNA upstream 201722 32502774 ~ 32520384 (+) True LOC103027057
XM_007238454.3 mRNA upstream 425225 32289852 ~ 32296881 (+) True ntpcr
XM_007238455.3 mRNA upstream 433256 32284577 ~ 32288850 (+) True map10
XM_007247347.3 mRNA upstream 1196763 31522285 ~ 31525343 (+) True c1d
XM_007237268.3 mRNA downstream 2773 32779544 ~ 32905463 (+) True itga9
XM_022685005.1 mRNA downstream 135010 32911781 ~ 32921578 (+) True LOC111196032
XM_022685006.1 mRNA downstream 135010 32911781 ~ 32921578 (+) False LOC111196032
XM_022685007.1 mRNA downstream 169645 32946416 ~ 32973568 (+) True fbln7
XM_022685010.1 mRNA downstream 333188 33109959 ~ 33210737 (+) True acoxl
XR_002651979.1 other upstream 44821 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 143554 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 983910 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 1293794 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 1299284 31422752 ~ 31422822 (+) True trnag-gcc_5
TU300211 other downstream 667346 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 1385810 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 2210257 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 2241682 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 3093247 35870018 ~ 35888815 (+) True gclc

Expression Profile