RNA id: XM_022684920.1


Basic Information

Item Value
RNA id XM_022684920.1
length 1542
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC103043156
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25310843 ~ 25315607 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACTGCACTGTACAGCAAGGAAGTCATCTCGAATCTAACTAAGAGTGAAGAGGAGAACTCTGAGGAGACAGGCCAGGAGATTGTCAGCCCTGATTGCTATATCAAACATCCACTACAGAACAGATGGTCTTTATGGTTCTTCAAAAACGACAAGAGCAAAACATGGCAAGCAAACCTGCGGCTGATTTCTAAGTTTGACACAGTAGAGGATTTTTGGGCGCTTTATAATCACATTCAGCTCTCCAGTAATTTGATGTCTGGTTGTGACTACTCACTGTTTAAGGATGGTATTGAGCCAATGTGGGAGGATGAAAGGAATAAGAAAGGAGGCCGCTGGCTAATCACACTCAACAAGCAGCAGAGGAAACTTGACCTGGACCGTTTTTGGCTGGAGACTCTGCTTTGCCTCATAGGAGAGGCCTTCGATGACTACAGCGATGATGTGTGTGGTGCTGTAGTCAATGTCCGAACAAAAGGAGACAAAATTGCTGTCTGGACAACTGACTATGAGAACAGAGATGGTATAACGCACATAGGGAGGGTGTATAAGGAGCGATTAGGCATCCCTATGAAAATGACCATTGGCTATCAGTCTCACGCAGACACAGCCACTAAGAGTGGCTCAACTACCAAGAACAAGTTTGTGGTCTGATATTCTGAACCtgattgctctctctctctctctttctttttctctctcttacacactctccCACTCTCTGATGCTCATTGACTCTGTTCTTGGGTTTGTGTATTAAATCCAACCCTAAACCAAAGCTACACATTAACAGAGTTGATCTAAAATTATAATGAACAACTAAGACTTGTTCAAACCCCAATAGGGAATCCATTCACACCTCAACCCACACAAACCTATAAGGAATTCAGCTCTCATAGGAACCACCAGCATTTAAACACTACACATTCACTCAAGTCCAAGGACAAAGGTTCATAATGATACAGATTCAAAGTGtaacaaaagtttgaacataaTTCCAGTCTTGTGAAAAAGACTGAAACTAGGTCACAACCTATGTTAATTAGGTAATGGAGATTGTAAGATATTTGAtctgttctttttaaaaacaaaaaacaaatctgtGTTGAATAATTTAACCGCTGAGGGAAAAAAACGCCTGTGTGCTCTTATCCAGCAGCCTCGCTGCAGTAGTGCCTAATGAACATAAACCTTTTAATTTATTCAGATTTATCCTAACATTTCATTTAGGTGGTTTAAGACCACTGAATGCATGTAATCAAACAAACCTTCATAAGGCTGccttatttttttcagcattaatgttattaaatttGGGGTTTTGCAATtcaatatgtgttttttatatatattatatatattttttgtgttgtttgatGAAACTGAGGTTTACATTCCGTGTCCGAATGTTAAAATATAGGACTTTAATGATGCTGTAATAGATAACATGTTCTTGTCTGAATGTAATTGGCTTCAATTTGATTCAACTTAGGCACAGTATTATTACTAGGTccttaaataaaacagttttatgagaattgga

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297393 lncRNA upstream 43859 25264106 ~ 25268474 (+) True G219173
TU297385 lncRNA upstream 59824 25252285 ~ 25252509 (+) True G219167
TU297379 lncRNA upstream 66339 25244129 ~ 25245994 (+) True G219162
TU297372 lncRNA upstream 94316 25217719 ~ 25218017 (+) True G219155
TU297371 lncRNA upstream 96525 25209535 ~ 25215808 (+) False G219154
XR_002651948.1 lncRNA downstream 73485 25389092 ~ 25389979 (+) True LOC111196010
XR_002651947.1 lncRNA downstream 80193 25395800 ~ 25397172 (+) True LOC111196009
TU297497 lncRNA downstream 123128 25438735 ~ 25442581 (+) False LOC103047652
TU297507 lncRNA downstream 129664 25445271 ~ 25445499 (+) True G219271
TU297544 lncRNA downstream 316869 25632476 ~ 25692517 (+) True G219282
XM_007237999.3 mRNA upstream 71332 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA upstream 71332 25226441 ~ 25241001 (+) False metap1
XM_022684918.1 mRNA upstream 119954 25184634 ~ 25192379 (+) True rrh
XM_022684917.1 mRNA upstream 137625 25161727 ~ 25174708 (+) True dapp1
XM_007237253.3 mRNA upstream 513734 24795057 ~ 24798599 (+) False ap5s1
XM_022684924.1 mRNA downstream 24857 25340464 ~ 25403594 (+) True LOC103042335
XM_022684923.1 mRNA downstream 24857 25340464 ~ 25403594 (+) False LOC103042335
XM_007237988.3 mRNA downstream 24857 25340464 ~ 25403594 (+) False LOC103042335
XM_007237989.3 mRNA downstream 24864 25340471 ~ 25406863 (+) False LOC103042335
XM_007237987.3 mRNA downstream 101773 25417380 ~ 25430559 (+) True c25h9orf72
TU297390 other upstream 9746 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 140090 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 469800 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1248545 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1604090 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 1909685 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 1914550 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 1914552 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 1914553 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 1914553 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile