RNA id: XM_007237993.3


Basic Information

Item Value
RNA id XM_007237993.3
length 1497
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC103043775
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25268092 ~ 25276976 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAGTTTTTGCTTCCTCCTTGAGACTTTGGCTTTTGCGTGCAGTGTGATGTATtttattctccctctctctttcctgtgATAACAGTAAAGCATGGCTACAGCAGGGAAGgtgATCAAATGCAAGGCAGCTGTTGCCTGGGAGCCCAACAAACCGCTGGTGATAGAAGAGATTGAAGTGGCTCCACCTCAGAAGGATGAAATACGAGTCAAGGTCGTAGCTACAGGTTTGTGTCACACAGACCTGTACCACCTATTTGAGGGGAAAGAAGGCTTCCCTACTGTCCTGGGCCATGAGGGAGCTGGTGTGGTGGAGAGTGTTGGACCTGGGGTTACTGAGTTCAAACCAGGTGATAAGGTCATCCCCCTCTGCGCTTCTCAGTGTAATGAGTGCAGGTTCTGCAAAAGCTCTAAGACTAACCTGTGTGAGAAAAGCTGGTCAACTAATCCATGCCCTACGATGGCAGGCCCTGTCACACGCTTCTCATGTCATGGTCAGCCAGTCCTGCAGTTTGCGTGCACCAGTACGTTCTCAGAGTACACGGTCATGAACAAGATTGATTTGGCAAAGATCCATGATGATGCCCAACTTGATCGTGTCTGTTTGTTGGCATGCGGCGTCTCCACTGGCTATGGAGCTGCCATCAACAGTGCCAAGGTCCAGCCAGGatcagtgtgtgcagtgttcgGGTTGGGTGCAGTGGGTCTCGCTGCAGTCATGGGCTGTAAGAGTGCTGGAGCCTCCAGGATCATTGCTGTGGACATCAATGAGGAGAAGTTTGAGAAGGCCAAGATCTTTGGTGCCACTGACTTTGTGAACCCTAAAGCACACAAGAAACCAATCAGTGACGTTCTGATTGAAATGACTGACGGAGGAGTGGATTATTCACTGGAGTGTGTGGGAAATGTTGAGCTAATGAGGAGTGCATTGGAGTCATGTGTTAAAGGCTGGGGAGTGAGCGTGATTGTTGGCTATACAGATCTTCATGACTTCGCTGCTCGGCCCATTCAGCTAATTGCTGGGAGAACTTGGACTGGAAGTCTGCTTGGAGGATACAAGATGAAGGATGACGTTCCAAAGCTTGTCCTGGACCACATTGCTGGTCGTATAAAGCTGGATGAGTTTGTGACACACACTATGAATCTGGAGCAAATCAATGACGCCATTGAGCTGATGAAGTCTGGGAAGTGcATTCGTACTATCATCAATATGTCCAAATAAGAAGTCAACAGCAAGACAACAATCATAACTTtgtaaattacacacacaaatcatTCGTTTTTGCTCTGTGCTCTGCTGGGTATTCTTTAggttgtagtattttttttaaaataagatattgcAATATCTTTAGCAGTATGTCATATGGTATCCATCATAcaatctgaaattgaaataaatctgcAGGTTACAGTACTACTCCTGTTATGCCAGTTTTTCATCATATTTTCACTgacaatataataaacacatttgaaataaatgttttataaatca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297439 lncRNA downstream 46405 25218844 ~ 25221687 (-) False LOC103046115
XR_002651945.1 lncRNA downstream 92006 25168637 ~ 25176086 (-) True LOC111196007
TU297442 lncRNA downstream 95451 25172387 ~ 25172641 (-) True G219218
TU297432 lncRNA downstream 110401 25157036 ~ 25157691 (-) True G219209
TU297323 lncRNA downstream 147505 25120372 ~ 25120587 (-) True G219130
TU297470 lncRNA upstream 44132 25321108 ~ 25321955 (-) True G219245
XR_002651949.1 lncRNA upstream 113083 25390059 ~ 25397490 (-) True LOC111196011
TU297619 lncRNA upstream 327457 25604433 ~ 25606058 (-) True G219344
TU297633 lncRNA upstream 365638 25642614 ~ 25653393 (-) True G219351
TU297636 lncRNA upstream 377179 25654155 ~ 25662895 (-) True G219353
XM_022684919.1 mRNA downstream 8413 25252832 ~ 25259679 (-) True LOC103044566
XM_007238001.3 mRNA downstream 18870 25241544 ~ 25249222 (-) True LOC103045808
XM_007238002.3 mRNA downstream 41842 25218149 ~ 25226250 (-) True LOC103046115
XM_007238003.3 mRNA downstream 52241 25194787 ~ 25215851 (-) True enpep
XM_007238005.3 mRNA downstream 84467 25178632 ~ 25183625 (-) True lamtor3
XM_007237994.3 mRNA upstream 4946 25281922 ~ 25290577 (-) True LOC103044089
XM_007237995.3 mRNA upstream 4973 25281949 ~ 25290576 (-) False LOC103044089
XM_007237992.3 mRNA upstream 22244 25299220 ~ 25309273 (-) True fam241a
XM_007230907.3 mRNA upstream 340935 25617911 ~ 25623102 (-) True LOC103022475
XM_007230906.3 mRNA upstream 347671 25624647 ~ 25640231 (-) False nsd2
TU296881 other downstream 1211215 24055525 ~ 24056877 (-) True G218781
TU296808 other downstream 1410585 23850963 ~ 23857507 (-) True G218720
TU296561 other downstream 2421887 22844833 ~ 22846205 (-) True G218545
TU296239 other downstream 3211599 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 3412951 21851372 ~ 21855141 (-) True G218240
TU297852 other upstream 1195652 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 1461828 26738804 ~ 26757592 (-) False zbtb18
TU298086 other upstream 1550052 26827028 ~ 26827527 (-) True G219671
TU298422 other upstream 2967309 28244285 ~ 28302408 (-) False epas1
trnai-uau_61 other upstream 4191299 29468275 ~ 29468368 (-) True trnai-uau_61

Expression Profile