RNA id: XM_007238000.3


Basic Information

Item Value
RNA id XM_007238000.3
length 2160
RNA type mRNA
GC content 0.49
exon number 11
gene id metap1
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25226441 ~ 25241001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagcagcagcagcagtcgtccctccctctctctcagcgTGATCGTCGCTGCCACTGCAGCCCTTTACCGGCCTTCTCCTGCTGAAAGCATGGCGGCGGTGCTCACACGGGAATGTGAGACGGAGGGCTGTAGCAAAGAAGCCAAACTGCAGTGTCCAACCTGTATTAAACTCGGGATACAAGGCTCATATTTCTGCTCTCAGGATTGTTTCAAAGGCAGCTGGAGTACCCACAAACTCCTCCACAAGAAAGcaaAGGAAGACAAAACAAAGGATGAGGGAAAGAACTGTGTGGAGAAGGAAGTCAACACAGACCCATGGCCGGGGTACAGATACTCTGGCAAACTGCGACCTCACTACCCTCTGACACCCATGCGACTTGTTCCTGGAAACATTCAAAGACCAGACTATGCTGACCACCCCCTGGGGATGTCTGAGACGGAGCAGATGCTCAAAGGAACGTCCCAGATTAAGATCCTCAATGCTGAAGAAATCGAGGGCATGAGAGTCGTCTGCAGACTGGCTCGAGAGGTGCTCGACATTGCTGCCATGATGGTGAAACCTGGAGTGACAACAGAGGAGATTGATCATGCTGTACATCTGGCCTGCACTGCACGTAACTGCTATCCATCACCCCTCAACTACTACAACTTTCCCAAGTCCTGCTGTACTTCAGTCAATGAGGTCATCTGCCATGGCATACCAGATCGCCGTGCCCTACAAGAGGGTGACATCCTTAACGTGGACATTACTGTTTACCACAATGGATACCATGGAGATCTGAACGAGACGTTTTTTGTGGGTGAAGTGGACGAGGGCGCCAAGAGGCTGGTGCAGACTACGTATGAATGCTTAATGCAAGCTATTGACGCTGtAAAGCCAGGTGTCCGTTATCGGGAACTGGGGAACATCATCCAGAAACATGCACAGGCTAATGGATTCTCTGTGGTTCGGAGTTACTGTGGCCATGGCATTCATAAACTCTTTCACACCGCACCCAATGTACCGCATTACGCAAagAATAAAGCTGTGGGGGTGATTAAGCCTGGTCATGTCTTCACTATTGAACCCATGATCTGTGAAGGTGGCTGGCAGGACGATACATGGCCGGACGGTTGGACAGCAGTTACTCGAGATGGCAAACGCTCTGCCCAGTTTGAACACACACTCCTGGTGACCGAAACAGGTTGTGACATCCTCACACGTCGCCTTGATGATGATGGCCGCGCTCACTTCCTGACACAGATGTAGAGTGGTGGGGAGAGAACACGGGCCCTTCCCCCAGTGGAGGACACGTCCGCTCCGCCCCTATCACCGATCAGCCAGTTACACTGTGGTTCTCTGTTGGGCAGGAGATGATTGGCCGAGTGGCCGTAGTAATGGAGTGTCTTATTGGGCGAGAAGTGgagatttgtttatttatgaatGTGTCATCTGAACAGTCACATGACTCAGCTTGGATCTGATCAGACTGGTAGACACCGACCTTTGACCTGCTTTGCAGTGCTGCCACTCTTGTTGgtgcacactgtgtgtgtgtgtgtgtgtgtttgcatgtagtattcctgtttggtttgttgtgtgttgtgctggttgaGTGGGGCTTGTGTGTCTTCAGGACAgtgatgtctgtgtgtgtgtgcgtgtctgagaatggatgctgagtgagtgaggATGTCAATCCAGATGAAACCAAACAACTGAAATATTTCCGCAGTTCCTTTTCCTTTACGGTTTATCCTGAGCATAATCGTTGGCCGCAGCCTCCTGTTTACAAAAGAGTGCCTCTAcagattattataatattaagaaaaacaatatattgatGAAATTCTGCCAGCGTGCATCAGACCCTTTCTCTGAAGACTTATTTGTCTATGATCATATGTGAAATATGTGCTGAACTTCTGTGCTGGAGTCTTGTGACTTTGGAATGGTCTGTAGTTTGAGAATGGCTCCTATTGGCTTTGTGCACACCAGTTAACATCTGTTGAAAAGGTTTAATTTGTTTGTGATTGGCCGAGGCATTGCCAGGTACAGAGCTGTTCTGCAGGAATGAACTGGTAGCAGGTTTTTGGTTCTTGGTGCTCTCTGTCTGAAACAGTCAAATCATTTCAGTGGTCTGCATTCAAGCTGAATAAAAGCATATTTTCCTTGTGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297372 lncRNA upstream 8424 25217719 ~ 25218017 (+) True G219155
TU297369 lncRNA upstream 10633 25209535 ~ 25215808 (+) True G219154
TU297371 lncRNA upstream 10633 25209535 ~ 25215808 (+) False G219154
TU297366 lncRNA upstream 18431 25204034 ~ 25208010 (+) True G219153
TU297362 lncRNA upstream 28165 25194787 ~ 25198276 (+) True G219151
TU297379 lncRNA downstream 3128 25244129 ~ 25245994 (+) True G219162
TU297385 lncRNA downstream 11284 25252285 ~ 25252509 (+) True G219167
TU297393 lncRNA downstream 23105 25264106 ~ 25268474 (+) True G219173
XR_002651948.1 lncRNA downstream 148091 25389092 ~ 25389979 (+) True LOC111196010
XR_002651947.1 lncRNA downstream 154799 25395800 ~ 25397172 (+) True LOC111196009
XM_022684918.1 mRNA upstream 34062 25184634 ~ 25192379 (+) True rrh
XM_022684917.1 mRNA upstream 51733 25161727 ~ 25174708 (+) True dapp1
XM_015602442.2 mRNA upstream 427842 24794890 ~ 24798599 (+) True ap5s1
XM_007237253.3 mRNA upstream 427842 24795057 ~ 24798599 (+) False ap5s1
XM_007237254.3 mRNA upstream 439101 24779609 ~ 24787340 (+) True cdc25b
XM_007237991.3 mRNA downstream 69842 25310843 ~ 25315607 (+) True LOC103043156
XM_022684920.1 mRNA downstream 71332 25312333 ~ 25315607 (+) False LOC103043156
XM_022684924.1 mRNA downstream 99463 25340464 ~ 25403594 (+) True LOC103042335
XM_022684923.1 mRNA downstream 99463 25340464 ~ 25403594 (+) False LOC103042335
XM_007237988.3 mRNA downstream 99463 25340464 ~ 25403594 (+) False LOC103042335
TU297354 other upstream 54198 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 383908 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1162653 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1518198 23696577 ~ 23708243 (+) True G218651
TU296281 other upstream 3007581 22218117 ~ 22218860 (+) False G218351
TU297390 other downstream 15949 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 1984291 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 1989156 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 1989158 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 1989159 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile