RNA id: XM_007238500.3


Basic Information

Item Value
RNA id XM_007238500.3
length 2190
RNA type mRNA
GC content 0.49
exon number 15
gene id eif3l
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40198388 ~ 40207129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAATTTCTCCCGGCTTTCCTTTCCCTCTCCCCGACTCGTGGTTGTTCTGAACGGGGGATAATCGTGTTGATTTTTAACTGGAGAAGCACGCTTTCACCGATTAAACATGTCTTCTTTCCAGAACGAGGAAGAAGAATATGATCCCTACAACTACACCAACGACTATGATCTTCACACTGGTGATCCTAAAGCTGACCTGGCGTTTGAGCGGCAGTACGAGCACCAGCAGACGTACCACGTGATCCCAGAGGTGATTAAGAACTTCCTGCAGTATTTCCATAAGACCATCTCAGACCTGATCGACCAGAAGGTCTATGAGCTGCAGGCCAACCGCGTGTCCAGCGAGAGCATTGAGCAGAAGATCTATGAAATCCAGGACGTCTATGAGAACAGttgGAACAAGTTAACAGATCGTTTCTTTAAGACTTCGCCCTGGCCAGAGGCAGAAGCTATTGCCTCATTGGTAGGAAATGATGCTGTTTTCTTGATTCTCTACAAGGAGCTGTACTATCGGCACATTTATGCTAAAGTCAGCGGAGGACCCACACTGGACCAGAGATTTGAATCCTACTACAACTACTGCAATCTATTCAATTACATTCTCAATGCTGATGGTCCTGCACCATTGGAGCTTCCCAACCAGTGGCTCTGGGACATTATTGATGAGTTCATCTACCAGTTTCAGTCCTTCAGTCAGTACCGCTGTAAAACGGCCAAGAAGTCTGAAGAGGAGATCGAGTTCCTGAGAAACAACCCAAAGATCTGGAACGTGCACAGTGTCCTGAACGTCCTGCATTCACTGGTGGACAAGAGCAACATTAACCGACAGCTCGAGGTTTACACCAgcggagGAGACCCGGAGAGCGTGGCTGGAGAATACGGCCGTCACTCCCTGTATAAGATGCTGGGCTACTTCAGCTTGGTGGGTTTGCTGAGACTGCACTCTCTGCTGGGGGATTATTACCAGGCCATCAAAGTCCTGGAGAACATCGAACTCAACAAGAAGAGCATGTACTCGCGTGTGCCTGAGTGCCAGATCACAACCTATTACTACGTGGGTTTTGCCTACTTAATGATGCGACGCTACCAGGATGCCATTCGTGTTTTTGCCAACATCCTGCTCTACGTTCAGAGGACCAGGAACATGTTCCAGAGATCCACCTACAAATACGAGATGattaacAAGCAGAATGAGCAGATGCATGGGCTGCTGGCCATCGCTCTGACCATGTACCCCATGCGCATCGACGAGagcatccacacacagctcagaGAGAAATACGGAGACAAGATGCTGCGCATGCAGAAAGGAGATCTGCAGGTCTTTGAGGAGCTGTTCAGCTTTGCCTGTCCCAAGTTCCTGTCTCCTGTTGTGCCCAATTATGACAACGTCCATCCCAACTACCATAAAGAACCAttccagcagcagctcaaagtTTTCGCAGAGGAAGTGCAGCAGCAGGCGCAGCTCTCCACCATCCGCAGTTTTCTGAAGCTCTACACCACCATGCCTGTGGCTAAGCTGGCCGGCTTTTTGGACATGACTGAGCAGGAGTTCAGGATCcagttgcttgtttttaaacacaagATGAAGAATCTGGTCTGGACCAGTGGCATCTCTGCTCTGGACGGAGAGTTCCAGTCTGCCTCTGAGGTCGACTTCTACATTGATaagGACATGATCCACATCGCAGACACCAAGGTAGCCCGCCGTTATGGAGACTTCTTCATCCGACAGATCCACAAGTTTGAAGAGCTGAACCGCACCCTGAAGAAGATGAGCGCCTCTGGCTCCTCGACCTCCAGCACCAGCACGGCCCGGGCCACATAAAGCCCGTCACCTCATCAGCAGCTTCTCTGAGGTTCCACCAGCCATCTGGACCCGGTTTACTGAAGCGGCGTAGAGTAGTTCTGATAATCGTTCTGGTGACTGGTGTTGCTTTGAACCCTCGACCACCGAATGATGATCGATACCCTGCGAAGATCCAGtgctccatttctctctctctgactaacTTATCAGGGGCAAACCCTTTTCTCAGATAAAGCAGATGTGGACACTCTGATCCAGTTTGTGTGTGGTTTAATTTTCTATCCATAAACCAACCAGGGCCAATTAAATTCTATTAATCCTGAAGCTTTTTTTGTAGATTAAAAAAGATGAATAAACGTTGATGTGGTGAAGCATT

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15029 EIF3L; translation initiation factor 3 subunit L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302316 lncRNA upstream 84725 40050507 ~ 40113663 (+) True G222819
TU302317 lncRNA upstream 131396 40062324 ~ 40066992 (+) True G222820
TU302319 lncRNA upstream 131396 40062324 ~ 40066992 (+) False G222820
TU302314 lncRNA upstream 156662 40040422 ~ 40041726 (+) True G222817
TU302152 lncRNA upstream 387562 39808569 ~ 39810826 (+) True G222732
TU302356 lncRNA downstream 33629 40240758 ~ 40241004 (+) True G222850
TU302375 lncRNA downstream 101819 40308948 ~ 40309775 (+) True G222869
TU302374 lncRNA downstream 102751 40309880 ~ 40312837 (+) True G222868
TU302394 lncRNA downstream 134425 40341554 ~ 40342323 (+) True G222884
TU302395 lncRNA downstream 134425 40341554 ~ 40342874 (+) False G222884
XM_022685111.1 mRNA upstream 87713 40086085 ~ 40110675 (+) True cdh23
XM_022685112.1 mRNA upstream 87713 40086085 ~ 40110675 (+) False cdh23
XM_022685102.1 mRNA upstream 615170 39577772 ~ 39583218 (+) True gphb5
XM_022685099.1 mRNA upstream 821750 39373982 ~ 39376638 (+) True LOC111196043
XM_022685098.1 mRNA upstream 827029 39335296 ~ 39371359 (+) False LOC103047800
XM_007238501.3 mRNA downstream 1277 40208406 ~ 40217036 (+) True LOC103047342
XM_022685147.1 mRNA downstream 123944 40331073 ~ 40339652 (+) True zfyve21
XM_022685152.1 mRNA downstream 779045 40986174 ~ 41008038 (+) False LOC103045354
XM_022685150.1 mRNA downstream 780758 40987887 ~ 41005132 (+) False LOC103045354
XM_022685151.1 mRNA downstream 780760 40987889 ~ 41008038 (+) False LOC103045354
TU302104 other upstream 484373 39678502 ~ 39714015 (+) True G222694
TU302106 other upstream 484373 39678502 ~ 39714015 (+) False G222694
TU301994 other upstream 961816 39197716 ~ 39236572 (+) False LOC103047486
TU301804 other upstream 1299569 38895102 ~ 38898819 (+) False oip5
TU301771 other upstream 1454206 38735959 ~ 38744182 (+) False LOC103040744
TU302391 other downstream 124375 40331504 ~ 40339211 (+) False zfyve21
TU302370 other downstream 142678 40349807 ~ 40352656 (+) True LOC103047655
LOC103047655 other downstream 142752 40349881 ~ 40352465 (+) False LOC103047655
TU302648 other downstream 858540 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other downstream 858540 41065669 ~ 41073316 (+) False LOC103045954

Expression Profile