RNA id: XM_015602807.2


Basic Information

Item Value
RNA id XM_015602807.2
length 2380
RNA type mRNA
GC content 0.52
exon number 6
gene id rab11fip2
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42908505 ~ 42935835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGAGGAAGCGGAGAGCAGGGCAGGTTTAACGGCACATTGGTGAGGGGCTCGCGCTGCGGTTTGTTGTGATTTAACTggtttttaatgaaaataaactgaaaacggGGATTAAAGCGAGACTCAGAGGCCCGCGAGCTGCTGCACGCTCCCCCGCCGCGCGCTCTTCGCTGAGTCTGGAGGGGAAATATGAGTGTGAGGTAAAAGATTACAGTCACTAATGTGCAGGCTGTACTGTGCCTATACAAGATGCCTGAGGTGCTAACACCTCTCCCATCCTTGTATTCCTCCTGAATGAAGTGCAAGGGAGGGACAATGTAGGTTAATTCCACTGCTTACACTCCTCACATACCTAACGCTGCTGGCTGTCTCCACTGATGACACTTCCACTGTAGTGTTGAGTCATGGAGCCCTCTCAGACCTAATCGAAGAATGAAGTGGTTTGGAGGTGATTTGATTTGAGGTGTTTTCTGGTCGTTGGTTGTATTAAAGCAGTCCCTGTCCATCGAACAAACACAACGGCACAATGTCACTAGCAGAGCAGTCGCAGAAGTGGTTCCCCACCCACGTCCAAGTGACGGTCCTTCAGGCGGCAGAGCTCCAGTCGAAGGGCAAGAACGGCACCAACGATGCCTACACCATCATTCAGCTGGGGAAGGAGAAGTACTCCACCTCAGTGGCGGAGAAGACCCTGAGTCCGGTATGGAGGGAGGAGGCCTCGTTCGAGCTGCCGGGCCTGCTGCTGGAGGGCAACCCTGAGATCTATGAACTGTGTCTCGTAGTCATGCACCGGTCCCTGGTCGGGATGGACAAGTTTCTGGGCCAGAAGATTATCAGCCTTAATGAAATCTTCGATAATAAAGAGCGAAGAAAAATCAACTGGTACACTCTGGACTCTCGCCCTGGTaagaagaggaaagagagagggaagatcCAGGTCAGCGTCCAGTTCATGAGGAACAACATGACGGCCAGCATGTTCGACCTCTCCATGCGGGACAAGCCGCGCTCGCCTTTCTCCAAGCTGAAGGACAAGGTGAAGGGCCGCAAACACGATGGTGCCTTCTCCGACACCTCCTCCGCCATCCTGCCCCGCTCAGCGCAGTGCGACACCGACCCTCAGCTCCCCCAGGGCCTGTCCAACCAGCACCCGCACCTCTCCAGCGGCCCGGCGGAGCCCAAACCCAAACGCTCCCTCCTCGCCGGCACTCAGAAACTCTCCGCTGCTCACTCCATGTCTGACCTGATCGGAGCCCACTTCAGACCCAAGCTCGACTCCATGAACTCCATAGAAGAGATCGatgGAGCAGGGCCGCACAGGCGCTCTCAGAGCGAGGTGCCGGGGTATCAGGACAGCGAGACGGTGAGTGACCCGTTCACAGATATCGGTGACCACATGCCGCAGAAGTACGCCACGCTTCCACGCAAGGGCAACCCCTTCGTTGGAGACTGGGAGCGGGCGGAACggaaggagaagaaggagaagttCAGCCTGCTGGAGAGAGTGACGGGAAAGAAAGAAGGACGGAAGGCGAGTAACGGAGGACGCTCGGGCAGTTCAGGAGACCTCCGATCCCCCAACCCGTTCACCTCAGAATCCTCCAGTGACGCCAACCCATTCCTTCAACACTACACACCCAGTGATAACACAAAAAAGCCCATCAGTAATGAAGACCTGAGCCAGAAGAAGAAGTTCTCCCCAGAGAGGAAGCAGGGCAAGAAGAACACAAGAGAATCTGAGGCTGAGCAGCTCCAGACCAGCATGGCGGCGTACAGCGGCCTCTCGTTCGAGGAGGTGGTGCAGGAGCTGATCAAGCAGAAGGAGGTGGTCAGGAAGAAGGACGCCCACATCCGCGAGCTGGAGGACTACATCGACAACCTGCTGGTCAGAGTGATGGAGGAGACGCCCAGCATCCTGCGGACGCCATACGAGCCCAAGAGGAAAGCAGGCAAAATCTCCAAGAAGTAGAGGTGAACTTCTCCATCACGCCACCAGAGCGCAGATTTGTGGCCTCGGAACAAGTTTACAGATCTTGCAGATTGAGTTTACATGCGATCAGAACATTTTTGACAGCTTGAGATTGTCagtgactttttaaaaaaaaaagaaggtttGGAAGTTATGGAATGAAGGATTCAGGACTCTACTGATGTGTGTCGATGCCAAACACACTTCTAAAAGGTATGTAGGTTTTGGTGAAGTGCATATACACATATGGttacagtttatttcaggtaaacTGTAATCGGAAAACGaacaaatttaaaattaaaatacacaaactttttctcttttttttttcttgtgcaaGGAGACCAACAATGTTGTGATCGGAAAACAGACTGTGGTGTATTACgtacagcaacaaaaaaagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302871 lncRNA upstream 177598 42730597 ~ 42730923 (+) True G223218
TU302857 lncRNA upstream 278258 42629977 ~ 42630263 (+) True G223207
TU302851 lncRNA upstream 376099 42532110 ~ 42532422 (+) True G223201
TU302848 lncRNA upstream 418646 42489583 ~ 42489875 (+) True G223198
TU302842 lncRNA upstream 455284 42452849 ~ 42453237 (+) True G223192
TU302903 lncRNA downstream 3372 42939207 ~ 42941673 (+) True G223241
TU302907 lncRNA downstream 78154 43013989 ~ 43014235 (+) True G223245
TU302954 lncRNA downstream 260233 43196068 ~ 43203769 (+) True G223274
TU302955 lncRNA downstream 260233 43196068 ~ 43203769 (+) False G223274
TU302957 lncRNA downstream 260233 43196068 ~ 43203769 (+) False G223274
XM_007238581.2 mRNA upstream 106236 42774245 ~ 42802285 (+) True fam204a
XM_007238585.3 mRNA upstream 186587 42711460 ~ 42721934 (+) True LOC103047539
XM_022685162.1 mRNA upstream 537044 42243811 ~ 42371477 (+) True gfra1
XM_022685163.1 mRNA upstream 537044 42243811 ~ 42371477 (+) False gfra1
XM_007260210.3 mRNA upstream 686467 42215743 ~ 42222054 (+) True LOC103043683
XM_022685170.1 mRNA downstream 253525 43189360 ~ 43193440 (+) True LOC103028407
XM_022685181.1 mRNA downstream 365051 43300886 ~ 43310949 (+) True LOC103043584
XM_022685182.1 mRNA downstream 395682 43331517 ~ 43335981 (+) False LOC111196053
XM_022685184.1 mRNA downstream 395683 43331518 ~ 43335986 (+) True LOC111196053
XM_007238564.2 mRNA downstream 544584 43480419 ~ 43569433 (+) False LOC103041531
trnag-gcc_49 other upstream 206293 42702158 ~ 42702228 (+) True trnag-gcc_49
trnag-gcc_48 other upstream 206462 42701989 ~ 42702059 (+) True trnag-gcc_48
trnag-gcc_47 other upstream 206794 42701657 ~ 42701727 (+) True trnag-gcc_47
trnag-gcc_46 other upstream 445152 42463299 ~ 42463369 (+) True trnag-gcc_46
trnag-gcc_45 other upstream 489852 42418599 ~ 42418669 (+) True trnag-gcc_45
TU302940 other downstream 227446 43163281 ~ 43166134 (+) True G223269
TU302942 other downstream 228350 43164185 ~ 43165537 (+) False G223269
TU303125 other downstream 675788 43611623 ~ 43615389 (+) True G223335
TU303156 other downstream 744351 43680186 ~ 43752486 (+) False mcu
TU303483 other downstream 1960342 44896177 ~ 44899645 (+) False mcph1

Expression Profile