RNA id: XM_007240289.3


Basic Information

Item Value
RNA id XM_007240289.3
length 3887
RNA type mRNA
GC content 0.47
exon number 11
gene id zfand4
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23662698 ~ 23691895 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCACTGCGGGTCTTCCCAGACCGATTCCGTTGCTCCCGTCTCCTGGAGAAACGGGGAGCGGGGCGCTTCATGAAGAGGCCTCGGACCGCCCAGCAGGAAAACAATGGTCACAGCTGGGTTTTTGTTTATTGACTGGGACGTCCTCCGCCGGATCCTGCTCCGCTGGCATTGACCGCTCTCTCCTCTGCTATTAGTCTCCGgatctcctcctccttctccctcCTCCGGTGGTGGTGATACTGCTGATTTACAGAATGTAGGCCTCTGTGAGGGCATGATGAGTGGCCCAGAGGACAGTGGTGACTCCACAGCCCTCACTCCACCTTGGGCAGGTTTAACCTCAATCTACCCCTGAGTGCCTGCCTTCCAGTCCCCACAAACATGGCCGACAAGAGAGAGCCACCCTTCTTCAATGATGATAACTTTGGGCTTGTCCACTACAAACTGCCCTTCTATGAGACCATGGAGCTGTTTATAGAGACTCTGACCGGGACCTGCTTCCAGCTGCGGGTTTCTCCCTTTGAGACTATCATCTCGGTCAAAGCCAAGATTCAGAGGCTGGAGGgTATCCCTGTTGCTCAGCAGCATCTGATCTGGAATAGTCTGGAACTTGAAGACGAGTACTGTTTGCATGACTACAGCATTGCAGAAGGCTGCACCCTCAAGCTGGTCCTTGCCATGAGAGGTGGGCCTATCAACACCAGACGAGTAACAGTGGAAGACTCTGTGAAGGAGACCTCTGACTGCTTGGATAAAAGAAGTGATGAGTTGTGGGAAAAGTCTCTGTCCAATAAACAGGTGACTTTTCTGGTGTACAGAGAGGGTGACCAGCTCAACTTCTTCCGGGTTGTGGATCGTGGAGATGGCACTCTCACGCCTGTTTCTGAGTCGCTCAGTGGTGGTTCTATGCGCAACATGTACGCtgaagaggaagaggatggTGTGAGCTCGTCTTCTGCTCAGCTGACTTTGGAGAATTCAATAACCATGAACAAGATGAAGCTTCTTAAATCCAAGATGGAGAACATGAACCTCAACAAAAAGCCCAAGAAGACTGCTAAGTTGAAAGTCAGGCCACCGGCTGGCCCCAGGCCTTTCAGTAGCTCTCTCGGCACCGTCCGCCACCACCGAATGTTCCGGGTCCTTCCTCAGATAGGCCACGCCTCTGCAACAACACATCTACCTCCAGTTGGTGACCAGCAGCAACCTGCAACCCCTTCCTCTGCTGCCGGCCCTTACAGCACGCCTCTCGCCCCTCACCGGAGTCCTACCTCTGGCAGAGCTATTCCCTCACTGGCAGCTTCTAGCACTTACGTGCTTCAGGAGGAGGAGCCATGGAAAAATCCCACCCCTCGGAAGATTAGATTGCCTCCTAAAGTGTCCAGGCTGGATGTGGGAGGGTCTAAGGTTATAAGAGACTGTGTACACCCGCCTTTCTCTGTCCTGTCTGCTCAACATGAGGCAGATCCCCAGAGTGATCGAATAACATTAGTGGAGGATGCGGTTGTGATGGAGCCTCCTAAACCTGTTTCCTTCAACAGCTTGCTTCCAGAACCCCTGAGCCTGGATGTGTCCACTCAGCGAGACGCCAGCTTGGACTCTTTAGGAGCTGTGGCTGAGTCTATGGCCGCACCGACATTGCTGTCTCAAGCAGTGGGTTCAGACTCTATCAGTACATGGCCTATAGGCACTAAGACACTGCAGTCTCAATCTGACAGTGACACATGGGCTATAGGCACCAAAACACTTCAATCCCAACCTGTGCTAAATCTCCCATCTGAGCCATTAACCCCTCCACGCATGCCTCAGCCCTTTGAGTTCACAGGGGCTTCCCTGCGGGCCAGCCCTTCTCACACACTTCTCAGATCTCTCGACAGTCCTCCTGTACCACCTCGCTCTCCTCCGCAGGCTGCTGCTCTCTGTGGCATCAAAGTCAGCTCTCCTGGCAAGCGGACAGAGGTGATGTCCAAAAGCGAGGCGCGGGACATCACCAAGATGGCCAACAAGGCCTCCAAAGAACTGCTGGGCTGTGTGAGTAACACGGAGTTGCTGGCCTCACTGGCTGGCACTGGGGGTCGAGAGTGTATGGCAGGAACACGTACACTGGGCAGACTGTGTGGTGCTTCTGCTCCTCTGCCTGCTAACATCCATCTGCTCCAGGAGGACCTGCTGCGCAGAATCAACCCGCTGCAGAGAGCAGTCGTGTACACGCCCTCAGGAATGCTGGGCTCTTCGAGTGGATCCTCCAGTTCAATAAAAAGACAAGGCACTCCAACATATCACCTCCCTCCTGTGAAAGCCCCTGTTGGCTCAAAAAAGAAGACTTCAAAGCACTGCTTCCTGTGTGGGAAGAAGACTGGGCTAGCCACCAGCTATGAGTGCAGGTGTGGCAACAACTTCTGCTCCACTCACCGCTATGCAGAGACCCATGACTGCACCTACGACTACAAAAATGCAGGACGCCGCTTTCTACAGGAATCGAACCCTATTATTAGTGCACCAAAGCTGCCCAAAATATGAGAGCTGGTAATGGACGATACAAGAAGGAATAATAGACCCATTAAAATCCATATAAAGATCAAGAACTTTATCACCAGTGTGTGCTTTTATCACCATGTTTGCTTAACCGTAAAGGACCCTATGTGTAGAAACAGAGCAAAAAATAGCACACgcttttttccttttgtttccGAGCAGTTACTTTTTTGCACAAATGTGAAAACATTACTATTTCTTCTTTACTGTATGTTTTCTTCACGTATtgtaagtaaaacaaaaaaagaacctGGCATGAGAAATACGTTGATTTAAATAAGTTTCCATTACGCTAAAATCTTTCGGATGAGCATAATGCATGACTTCATCaacatatgtatgtgtgtatgtgtgtgtatatatacagtccCATGCAAATGTTTGGGCACCCTTGGCCAAATGAAACAATTTGTGTATTTTCACCACAGCCTCCATCACAAACCAAATACGAATACTAGTGCACAATTActctacattttattacataacataCAAGAATATATAAAGTAATTAATAAAGGTAATAGATGGTAATTTGATTTAGCTGACATCTAGTGACATGTCTCGTGATTTGCACAATTTGTATATCAAAGGCTAAGACTACGTCCAATACCTAGAGTACCCAAACTTTTACACAGAACATGATTTTTGAAATATAAAGGACAGGGTAACTATTATTTGGTGATAGTAGTTTTCTTTAGCCACAGAGGGTGTGTGTTCTAAAAACACACAGCCTCTGTGTCATCTGACCAAGGATGCCCAAAATGTGTATgagaatgtataaaaatatatgtatttttagttgtttttttataatgggAGGGATGACGTTATAAGGCAAGTCTTTGAGAGATGCACTTTAGGAATCATGAATATTTCATGGGACAATGAGGAGATGATTTATGTGTTTTGTAAGAAGTGTTCTGTTCTGATTGTTTGAGTGTCCCAGTATTCAACAGTtcatctgtctttttctctgaaTTGGTTCATTTTAGACATGCAGCACTCTACTCAACATCATAGCAGGTACTACACACATATGATAATAGAAAATACTGTGTCTGTCTAGTGTTGGGTTTTCCTTTGAATGCAATTATGCAGGTTATACATGTTTGTCAGCTTGTAAGCACCACTATGCAGTACAGCCACGTAGCATTCTTTACTATTTTCAGAAGGGCTTGCTGTGGGACGATGTGGGCACTTGGGTGGAAGCTATTTTGGAAGGTTTCTTTTttactataatttttttattattatttcacagCACATTCAGCTTAAAGTTGTTGCTTAAAGTTTTCAATATTTATTTGGGGATCCAACTAATAAATATACCTGTGTTTCCTTAGATGTGT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12163 ZFAND4, ANUBL1; AN1-type zinc finger protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296623 lncRNA downstream 7553 23605482 ~ 23655145 (-) False march8
TU296635 lncRNA downstream 195654 23459492 ~ 23467044 (-) True G218602
TU296543 lncRNA downstream 819484 22843001 ~ 22843214 (-) True G218527
TU296533 lncRNA downstream 844594 22809819 ~ 22818104 (-) True G218519
TU296444 lncRNA downstream 1210762 22441756 ~ 22451936 (-) False G218448
TU296777 lncRNA upstream 66536 23758431 ~ 23760825 (-) True G218698
TU296784 lncRNA upstream 91923 23783818 ~ 23784105 (-) True G218703
TU296776 lncRNA upstream 93472 23785367 ~ 23786980 (-) True G218697
TU296790 lncRNA upstream 123976 23815871 ~ 23816669 (-) True G218709
TU296787 lncRNA upstream 130588 23822483 ~ 23824595 (-) True G218706
XM_022684883.1 mRNA downstream 5712 23454175 ~ 23656986 (-) False march8
XM_015603359.2 mRNA downstream 5712 23454175 ~ 23656986 (-) True march8
XM_022684885.1 mRNA downstream 5712 23454610 ~ 23656986 (-) False march8
XM_022684884.1 mRNA downstream 118296 23461705 ~ 23544402 (-) False march8
XM_015603357.2 mRNA downstream 118308 23454175 ~ 23544390 (-) False march8
XM_022684890.1 mRNA upstream 1361 23693256 ~ 23708270 (-) False washc2c
XM_022684888.1 mRNA upstream 1361 23693256 ~ 23708270 (-) False washc2c
XM_022684887.1 mRNA upstream 1361 23693256 ~ 23708270 (-) False washc2c
XM_022684889.1 mRNA upstream 1361 23693256 ~ 23708270 (-) False washc2c
XM_022684886.1 mRNA upstream 1361 23693256 ~ 23708270 (-) True washc2c
TU296561 other downstream 816493 22844833 ~ 22846205 (-) True G218545
TU296239 other downstream 1606205 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 1807557 21851372 ~ 21855141 (-) True G218240
TU296033 other downstream 1905299 21755426 ~ 21757399 (-) False LOC111195999
TU295824 other downstream 2455896 21160374 ~ 21206802 (-) False LOC103031576
TU296808 other upstream 159068 23850963 ~ 23857507 (-) True G218720
TU296881 other upstream 363630 24055525 ~ 24056877 (-) True G218781
TU297852 other upstream 2780733 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 3046909 26738804 ~ 26757592 (-) False zbtb18
TU298086 other upstream 3135133 26827028 ~ 26827527 (-) True G219671

Expression Profile