RNA id: XM_007240293.3


Basic Information

Item Value
RNA id XM_007240293.3
length 908
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103038538
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23409098 ~ 23414421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCAGTGACTAGTGCTGAAAGCTTGCTGGACCCTTTCACCCTACTGAATCTCTTAACCATGGAAAGGGAAATCAAGATTTGTTCCAAGATGATTTTCACCACTTTGCTCTTCCTGGCACTGTCGGGAATGGGAAACCCGAGCCTTATCAGCAAGAGTCACAAAGGAGACAATCCCCTGCTGCAGTATGTCCTCAATAACTCTTTAAGGGAACATCCAGTGCTGACCAAACTACGGCTGagAACTATGGAAGATCCCAGGAAAGGCATGATGGTGGCAGCAGAACAAGCTCAGCTAATGGCCAATTTACTGAAGTTAATTAAAGGAAACAAAACCATAGAAATAGGCATGTACACGGGATACAACACTCTGAGCATGGCTCTGTCTGTTCCTGAAGATGGTAAAGTGGTGGCATGTGAAATAGAGGagaaatatatcaatatttccaAACCATTCTTTGCAGAGGCTGGGGTGGAGAATAAAGTTAATATTCGCCAGCAACCTGCACTCACAACTTTGGACGAACTCCTTCAAGCTGGTGAAGCTGGAACATATGACTTTGTGTTCATCGATGCTGacaagaaaaacaatgaaaattaCTACGAAAAATCTCTCCAGCTTCTTCGGAAGGGAGGCATAGTAGCTATTGATAATGTCCTTTGGGGAGGGAGAGTCATCAACCCCGAAGAGAGCGACACCACCTCCCAGAGCATCGACGAACTGAACAAGAAAATACACAAAGATAAACGAGTCGATCTGAGCATGCTCCCTGTCGGAGACGGCCTTACCCTGgctattaaattataattcctcactatacattcaaacagaacagagaaaaacatGACTATGACAGTAAAATAATCGATTAATGCATATTTAGGTCGCACTGTCATTTACATACTTGTT

Function

GO:

id name namespace
GO:0008171 O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296577 lncRNA upstream 117021 23291508 ~ 23292077 (+) True G218561
TU296457 lncRNA upstream 590984 22797312 ~ 22818114 (+) False kcnma1
TU296486 lncRNA upstream 604632 22803912 ~ 22804466 (+) True G218477
TU296483 lncRNA upstream 680598 22727646 ~ 22728500 (+) True G218474
TU296463 lncRNA upstream 874677 22533993 ~ 22534421 (+) True G218455
TU296595 lncRNA downstream 23813 23438234 ~ 23446098 (+) True G218570
TU296594 lncRNA downstream 27481 23441902 ~ 23446098 (+) False G218570
TU296605 lncRNA downstream 95464 23509885 ~ 23606964 (+) True G218576
TU296688 lncRNA downstream 282156 23696577 ~ 23697870 (+) False G218651
TU296695 lncRNA downstream 295163 23709584 ~ 23714345 (+) True G218654
XM_007240294.3 mRNA upstream 113416 23292110 ~ 23295682 (+) True znf503
XM_022684862.1 mRNA upstream 590994 22563798 ~ 22818104 (+) False kcnma1
XM_022684565.1 mRNA downstream 3693 23418114 ~ 23421870 (+) True LOC103038211
XM_022684451.1 mRNA downstream 10188 23424609 ~ 23433147 (+) True LOC111195938
XM_007240272.3 mRNA downstream 369384 23783805 ~ 23834228 (+) True tet1
XM_007240273.3 mRNA downstream 369384 23783805 ~ 23834228 (+) False tet1
XM_007240270.3 mRNA downstream 421420 23835841 ~ 23841310 (+) False LOC103032634
TU296278 other upstream 1190238 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 1190238 22218117 ~ 22218860 (+) False G218351
XR_002651938.1 other upstream 1312446 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 1312446 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 2993455 20412244 ~ 20415643 (+) False LOC103032529
TU296687 other downstream 282156 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 644790 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 1427881 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 1747521 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 1842529 25256950 ~ 25302587 (+) True G219171

Expression Profile