RNA id: XM_007240306.3


Basic Information

Item Value
RNA id XM_007240306.3
length 3017
RNA type mRNA
GC content 0.51
exon number 4
gene id vwc2
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22328143 ~ 22359613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTTTTCGTACACAATGTGGCAGCTGAGTTGCAGTTATGTAGTCTCGGTGTTGTTCACTGTGGTACTGCAGCTGTTTTTGGCTGTTGCTCGTTGTCAGGTTTCAGCAGGTTGTTGTTCAGGGGACTCGCTGCAGCTTTAAGAGTCTGGATAAGAGTCTGGGAGCATCGTGGGAACCAAAACAAAACACTCCCAAGTTTCCCTTTAGAAAGTGGTTGAGGTAATGGACTGCGCCCCCTGACGGCGGGTGtagagagtctctctctctctctctctttctctctgttttactgTCTCTTTCCTCCAACTGCCCGCTACGTGACGTCATCGAGCAGGGGTCTTTTTTTTCTGGCACCGAAGCAAAAGTGAGCGCTCGCGGCCGCGCGGCCACTCCTCTCTCAGCTCGGCGGAGCGGCGGGGAGACggtcaggaggaggaggaggaggatatGGAGAGCTTTCACCAACAGCTGATCTCCTGAGTGTCCGTCTGAGCCTCGGCTCgcctcgctctcgctctctctctctgtccgcGTGCAGCTGTGGGTGGTCTTCAGGGAATAAGGAGAAGTTTGAGAGCCcgggagaacacacacacacgcagatgggcCCAGCCTTTGCTTGTCGTTTGACGAGTGTTATGTGAGCCCAGGTGTCGTCCCACCGTGCAGGTGGTGGGAAGGAGAGATGCTGCGCTCCATTGCCATGACAACAGGTCTGGTCTTCATAACTTGGCTCCTGCTGACGAGCGCACGGGGCAGTCCCATCGTGCCGGTGCCCGAGGCTGCGGAGAGGGAGCGTCTGGAGCGGGTGCTGACCCAAGCCAAGGAGGGCATGCCTAACCTGAGTGCCCAGCAGCGCCTCGAGGAGATCAATAACCTGGGACTGGACGGGGTGAGGGGAGGCAACAGGACGAGCGGCAACAAAGCGAGACCCAGCTGGAGCCCCCTGCGGCGAGGAGGAAGCGGCAAACCTCAGGGAAAGACACAGGAGGTCTGGGGCGAGCAGGACTCGATGAAGCAGACTGATGAAGGCCCCACAGGAGAGGCCAATACCTCGCTGGACACCGTTGATGAGTACGCGTACCCTGATTACAGGGGCAAGGGCTGCATGGACGAGACAGGGTTTGTGTTTGCCATCGGGGAGAAGTTCACCCCTGGACCCTCTACATGCCCCTGCCTGTGCACAGACGAGGGGCCGATGTGTGACCAGCCCGACTGTCCGAAAGTCCACCCACGCTGCCTGCGAGTGGATACCAGCCAGTGCTGCCCTCGGTGTAAGGAGAAGAAGAACTACTGTGAATTCCGAGGCAAGACATATGCCTCGCTGGAGGAGTTTAAGGTGTCTCCATGTGAAAAGTGTCGGTGTGAGCCCAGTGGGGAGGTTCTGTGTTCTGTCTCTGCTTGCCCACAGACAGAGTGTGTGGATCCAGAGTATGAACCTGACCAGTGCTGCCCAGTGTGCAAAAGCGGGCCAAACTGTTACGCGGATACTGCGGTGATTCCAGCTGGCCGCGAGGTGAAGATCGACGAGTGCACCATCTGCTACTGCACGTACGAGGAGGGCACCTGGCGCATCGAGCGGCAGGCCACCTGCAGCAGGAACGAGTGTCAGCCCAGCTAGAGCGGCCGGGGCCGTGTCCAGCTCTCACAAATGACCCCCTCCAGCCTTCACCTAGACAGCTTCGTAGCAGCCCGGCGCTGCGGCTCTGAGCTTACACAGGCTGCCAGGACTCCAGCATTATGGGGGGATTACAACCGTCATGACTGTTTGTGACAGCTCATGACTATATGACCTCAGACTGTCAAATAGCATGTAGCACGGGGAGGGGGGTTCGCTAGCCTGGGAGAGACGCCAAGGGCCAGGCCACACAGCGCTACATTCCTCATGCTGTGTGGCACTGCCTCGGAGCTGACATCAAGTGTCACGAAAAGTGCCATGTTTATGATAGTGATACGTACACAGGCCTGAGTTCAAAGGGGCATTGGGATAGAATCAGCTATATTACTACATGAACTTTCTATCGAGATTTATAACCAGTAATAAaggatatttatttatgtatgtattgaTACATTTACGGAGCCAAGGGGACAATGTCTGGTTTACAgttaaaatgctattttttatagTCACTGTATTTTGATATTATGTCATGTACGTTACAGGGACTTAAGTCCGACTCATTAGAATGTATAGAGTGTAAACAGCTGTCACAATGGAtgaaggaataaaaaaataaatgaaaaaacaagttGTGTTAGACATCAGGAAGACAAGCTGTAGTCAGCAATCACTCTCAATGTCAAACACACTTCTCAGTACGTTCCACAGCTCAATGGATGTGTTGAACTGTTTAGGCAAATCAAAGGAGAAAAAATAGCAGCTTGCAGATGTTTGTATATtagttctttttttccttttttttttttttttgtgttccaaACTTAAGTGCATTTTAACAagatgtgtttctgtatttgtgtttacATGTTTCAAATAAATCGAGTTACACTGTGCACTAAAGCGTCCGCCTCAAGACACTGATGTCAGGTTAACCGGGGACACCATCTAAGTCCGTTGGCATTTTTAAAAAGACCGAGACATGCTCAAAATGTCAAGCCGAGAagctgaagaagaaaaaaaaggagggggcaaaaaaaaaaatcctgtaaatTTCATCTGGAGCATCGCTTGTCCGAAGGGCTGAGCGAGACCCAGCTGTTACTTGTGGGATGACACTGCCACCCTGCAAGTCTCTGAAACTCTTTTCAATCAGGCTTCAAATATTGCATCAGATTTTGGATGACGGGGCCCCGCCTGGCTCAAAAGTCAAAGCAACTTGGCTCCTGCACCCTCGTGAGGCCCTGCAAATTAGTCACTGCACCCTGATGGATGAAGACTCTGAGGTTTACTgtcatacactgacatgccatatgtcatgggacaggaactagtttTGTATCTCATGATTTTACCATGTCctgtggaagctaaagaacacgtGGAGTCTCTTGCA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296355 lncRNA downstream 123680 22202153 ~ 22204463 (-) True G218388
TU296353 lncRNA downstream 138552 22179388 ~ 22189591 (-) True G218387
TU296351 lncRNA downstream 161750 22164760 ~ 22166393 (-) True G218386
TU296331 lncRNA downstream 208080 22109175 ~ 22120063 (-) True G218376
TU296329 lncRNA downstream 228748 22099142 ~ 22099395 (-) True G218374
TU296413 lncRNA upstream 36479 22396092 ~ 22399546 (-) True G218423
TU296426 lncRNA upstream 46348 22405961 ~ 22407749 (-) True G218435
TU296436 lncRNA upstream 57285 22416898 ~ 22419373 (-) True G218441
TU296444 lncRNA upstream 82143 22441756 ~ 22451936 (-) False G218448
TU296447 lncRNA upstream 86243 22445856 ~ 22449196 (-) True G218448
XM_022684936.1 mRNA downstream 31371 22285006 ~ 22296772 (-) True spata48
XM_007240314.3 mRNA downstream 31484 22284552 ~ 22296659 (-) False spata48
XM_007240310.3 mRNA downstream 53251 22250732 ~ 22274892 (-) False ikzf1
XM_007240307.3 mRNA downstream 53251 22250732 ~ 22274892 (-) True ikzf1
XM_007240311.3 mRNA downstream 53252 22250732 ~ 22274891 (-) False ikzf1
XM_022684842.1 mRNA upstream 19510 22379123 ~ 22394920 (-) True LOC103042035
XM_022684843.1 mRNA upstream 21233 22380846 ~ 22394916 (-) False LOC103042035
XM_022684844.1 mRNA upstream 22499 22382112 ~ 22394912 (-) False LOC103042035
XM_007240302.3 mRNA upstream 486669 22846282 ~ 23286449 (-) True lrmda
XM_022684882.1 mRNA upstream 1079043 23438656 ~ 23446125 (-) True LOC103037680
TU296239 other downstream 271650 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 473002 21851372 ~ 21855141 (-) True G218240
TU296033 other downstream 570744 21755426 ~ 21757399 (-) False LOC111195999
TU295823 other downstream 1121341 21160374 ~ 21206802 (-) False LOC103031576
TU296561 other upstream 485220 22844833 ~ 22846205 (-) True G218545
TU296808 other upstream 1491350 23850963 ~ 23857507 (-) True G218720
TU296881 other upstream 1695912 24055525 ~ 24056877 (-) True G218781
TU297852 other upstream 4113015 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 4379191 26738804 ~ 26757592 (-) False zbtb18

Expression Profile