RNA id: XM_022684936.1


Basic Information

Item Value
RNA id XM_022684936.1
length 2863
RNA type mRNA
GC content 0.45
exon number 9
gene id spata48
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22284552 ~ 22296772 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTTTAATACCGGTTTTATACTCATTAAAATGAACAGGAAATTGGTTAATTCAATAACTGTTTGATAAGAGAGAAAAACGGCTGGTGTAAAcaaggctaagctaagctaagctaaactggGTCATTTTACTCCTGTTGGGTCTCTGAAGTTATTGGAGTGTGTCGGTTAGTGGTCGCTAGGCAACAGCGGACGCTGAGCACAGGTTAGGACGCGGCTGAAGCGCAGAGGCAGGAGCTGAACAGTCTGAAGATCGCCTGAGGAAAACTAGCTACCTGTGAGTCTACCTGTGGTTTATTTCAAACCTGTTCTGATGAAGCAGGTACCCAGCAGACCCCCCAGCGTGAGGCTTCTCACGCGGCCCTGTGAGACCAGAGCGGAAACGAGCAGATGGCTGTGCAGAAACCTGAACCTGCCCTATGAACGGGGTCCATCTGAGGTTAAGAGTCTGACTGAGACAAACGAGCCTGGCTTCCTCAAGTTCAACCCTCAGGCCCACCCTCCCGCTCACAGTGCCCCCCTGGCTCCTCTCAGAGACCTCGTTCCGCTGACAGAGCCCGGCTCCGGCCTGCTGAGCGCAGGAGCCCGGGCTGATCTCAGACTCCCGGGAAAGACCAGGTTTATAGATCGAGTTTATACCCCGTCTGACCTGAGGACCCCCTCTGGAGCTAGAGACAGACCCCAGACTCCAACAGGAAGACCCTCAGCTGTTACAGAAGATCTGTCCGAGGACAAGCGCTGGAACTCAAGAACTAGATCAGAGCTAGCAAAGCTTCAAGACCAGGCAGCCAATGAGGAAACTGAGCCAGATTTCCCCAAAACTCCCTGGTCTGCCAAACCTCCTGAGAAGGATGTACGCTCCTCTGTCCTTTCTGACTTTGTGGACACGGCAGCTCGGCGGTACAGCTACACATCAGCGGCTCAAAGAGGTTATGAGGATGTAGACTGGGACTCTAAGTTGCCTCCTCGTTTCAAAGCACCCTTAAGCACTCTGGAGAAAATGGCTGACCCTGTTAATCAGCACTTCACTCTGAAGAGATATAACAGCCGGCCTGAGCTATGGCAGGCCATTGGAACTTATTGGAATAAGCATCAACTTCGTGCCACATATAATGCGAAGAAACCTGTTAGtttTACCAGCCCACATCCAAAATCAGGCCAAATTCCTTTATACTGTGGTGTGGTGGGCTCTGAGAATATGGACAACGTAGATGACCCAGATAAGGATTTTAAACCTCTAACCGTGCTGCGCACCATCTTGCCCCCTTACACTCCAACAGCCCAtcgtCCCACTATACCTGGTTACACTGGTAAAGCTCTGCATGCCAGGCCACACACCTCAGACATCACACTGCCCTCTCGTCCAATTCCAGGTTTATGCAACAAGATCCTCCAACGTGATGCAGATGAGCTTAGAAACAGCCTACCACCCTCTCACTCTCGCAGGCAACGGTAAAACGTCCTCAGCTTTCAGAATGAGTAGGAATGGGGCATCTGCAGCACAAGCAGAGAGGaagggggaggaggaggtgtCTGAGAGAGGCACTGGAGGAAAACCAAACTCCTCACCCAGGGACTGGGTGGGTTTTTTTTGAAAACGTGTTTCCTAGCCGGGTCTCAGAAGAGCTGGTTTACCGGCTTTTGGAGCAGCCTTCTCCAGATGGTCCTATCCAGAGCTGAACTGTATGAGTTGCTGGTGGTAATCGTGGTTTTTCGCTCGACCCAGATCCATTTTCCTGGAGCCACTGGCCCTCTGAAATCTGTTTCCTCTGCTGATAAAGCAGGCCTCCCATCTTTTCCTTATAGCAGAGAGGAGGACCAGCTAGTACCTTAAGAACTTCCTCTAACTTTCATCACCCTCTGAGTTTACACCAagaattactgttattttttcagCAGCcggtagaaataaaaaagaataaaaaaaagatacaaactgatattttttttactctaaatacagtctaaataattataaaacatagACTGGTCTCATTCTATTGGTTGTCTGGTTATTTGATGAGTTGATGAGCCTTAGACACAATCCTGTTTCACCCCTTTCAACTACCACTTAGCCCTTCCCCTTTGTTTTGTGTATTCACAACTAGAGGAAGGGTGTGCTGATTCCTATTGGAATAAAGGGGTAGGTTGATGTATAAAGGGATTGGTTGATGtgttgggtttactttgtcccacaaaagtacacaatatatgaagaaatcagacttcattagcagaaaaacagcggaaaaatgtaaaaatagaccttaaaaagagatatgcCAGCAACATTAACATGGCTTTCTTTTCAAAActagctaaatatttaatttccataaacactataaatggacctaaaatactgtttattcaAAAGTTCTATTTCACAAGTTTATCACAATTCCCATGGTTCTCCAGTgaacaaataaattcagttcaaTGTGCATTACTATTATCCTTCAAGcaacaatattaataaatttaaaCACAACTATAGTTACTGATATTGTAAATTGTCATTCTGCCCATCCCCTTTTTAAAGACGccctaaactaaaataaattccaGCCGCGAGGTTGCATAACTTTAGCACTCCTCTGCTATCACAATAGAATTGCATTGTCGCCTACAGAGCATGATTGCAGCCTGGTACTGATGCAGTGttcttatttaattaatttatttctttttcaacATATCAGGTTCTTAGGTATAGGATTTTAACCACTTCCAAAGGAAAAAGtgacacttaaaaataagggtgacacttaaaaataagggttaTGGGTACAAATGACAAATGGCATTGGGTCCTAGAAGTTCAGTTCCAGTATTTCAATGTCTAATTAAAgctaatgtatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296355 lncRNA downstream 80543 22202153 ~ 22204463 (-) True G218388
TU296353 lncRNA downstream 95415 22179388 ~ 22189591 (-) True G218387
TU296351 lncRNA downstream 118613 22164760 ~ 22166393 (-) True G218386
TU296331 lncRNA downstream 164943 22109175 ~ 22120063 (-) True G218376
TU296329 lncRNA downstream 185611 22099142 ~ 22099395 (-) True G218374
TU296413 lncRNA upstream 99320 22396092 ~ 22399546 (-) True G218423
TU296426 lncRNA upstream 109189 22405961 ~ 22407749 (-) True G218435
TU296436 lncRNA upstream 120126 22416898 ~ 22419373 (-) True G218441
TU296444 lncRNA upstream 144984 22441756 ~ 22451936 (-) False G218448
TU296447 lncRNA upstream 149084 22445856 ~ 22449196 (-) True G218448
XM_007240310.3 mRNA downstream 10114 22250732 ~ 22274892 (-) False ikzf1
XM_007240307.3 mRNA downstream 10114 22250732 ~ 22274892 (-) True ikzf1
XM_007240311.3 mRNA downstream 10115 22250732 ~ 22274891 (-) False ikzf1
XM_007240308.3 mRNA downstream 10115 22250732 ~ 22274891 (-) False ikzf1
XM_007240313.3 mRNA downstream 10116 22250732 ~ 22274890 (-) False ikzf1
XM_007240306.3 mRNA upstream 31371 22328143 ~ 22359613 (-) False vwc2
XM_022684841.1 mRNA upstream 31371 22328143 ~ 22359005 (-) True vwc2
XM_022684842.1 mRNA upstream 82351 22379123 ~ 22394920 (-) True LOC103042035
XM_022684843.1 mRNA upstream 84074 22380846 ~ 22394916 (-) False LOC103042035
XM_022684844.1 mRNA upstream 85340 22382112 ~ 22394912 (-) False LOC103042035
TU296239 other downstream 228513 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 429865 21851372 ~ 21855141 (-) True G218240
TU296033 other downstream 527607 21755426 ~ 21757399 (-) False LOC111195999
TU295823 other downstream 1078204 21160374 ~ 21206802 (-) False LOC103031576
TU296561 other upstream 548061 22844833 ~ 22846205 (-) True G218545
TU296808 other upstream 1554191 23850963 ~ 23857507 (-) True G218720
TU296881 other upstream 1758753 24055525 ~ 24056877 (-) True G218781
TU297852 other upstream 4175856 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 4442032 26738804 ~ 26757592 (-) False zbtb18

Expression Profile