RNA id: XM_007240374.3


Basic Information

Item Value
RNA id XM_007240374.3
length 2614
RNA type mRNA
GC content 0.44
exon number 9
gene id got1
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 20091211 ~ 20101103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTCCGTCCGGCTTGAAGGTGAAATTCCCGTCTATCGGCTCGGCTCTCCCGGCGACAGCGCGCGTCTCCCCCGCTGCTCTCTGTAAACCCGCTCCTCCGTTCACCCGCGAGCATGTCGTTGTTCAGCGACGTCCCGCTGGCCGCCCCCGTGGCCGTGTTCAAACTGACGGCCGATTTCCGTGAAGACAAGAGTCCCAGCAAGGTGAACCTGGGAGTGGGAGCTTACAGAACAGACGATTGTCAGCCATGGGTGCTTCCCGTGGTGCGGAAAGTGGAGAAGATGATCGCAGGAGACGACAGTCTAAACCATGAGTACTTGCCTATCCTGGGTCTGCCAGAGTTTCGTTCTAGTGCCTCTAAAATTGCTCTGGGGGAGGACAGCCCAGCCATTCAGGAGAAGAGGGTGGGAGCTGTGCAGTGTCTCGGGGGCACTGGAGCTTTGAAGATTGGTGCTGAGTTTCTCCGCAGATGGCACAATGGgaacaacaacacaaaaacccCAGTTTATGTTTCTGCACCCACATGGGAGAACCACAATGGAGTTTTTCTTAATGCTGGGTTTGAGGATATTCGTCCATACAAATATTGGGATGCACAGAAGCGTGGCCTGGACCTGTCTGGTTTCCTGGGAGATCTGGAGAGTGCACCTGAGCACTCTATCTTTATTTTGCACGCCTGTGCACACAACCCCACCGGCACAGACCCCACCCAGGATGAGTGGAAGCAGATTGCTGATGTTATGAAGAGAAGGAGCCTCTTTCCCTTCTTTGACTCAGCTTATCAAGGCTTTGCCTCTGGAAACTTGGAGAAGGATGCCTGGGCAATTCGTTTCTTCGTGTCTCAGGGTTTTGAAATATTCTGTGCCCAGTCTTTCTCAAAGAACTTTGGACTGTACAatGAGAGGGTCGGTAACCTGACGGTTGTGGCTAAAGATGAGGATAACCTGAACCGTGTTCTCTCCCAGCTGGAGAAGATTGTACGAATCACCTGGTCCAATCCTCCCTCTCAGGGAGCTCGTCTGGTTGCCATCACGCTTACTACCCCAGATCTCTTTGCTGAATGGAAGGACAATGTTAAGACAATGGCTGACAGGGTGCTGCTGATGCGAGCTGAGCTTAAAGCCAAGCTGCTGGCCCTCGGTACTCCAGGCACCTGGGATCACATCACCGATCAGATCGGCATGTTCAGCTTCACTGGTCTCAACCCTAAACAAGTGGAATACATGGTGAAGGAGAAGCACATCTACTTGATGGCCAGTGGCCGCATCAACATGTGTGGCCTGACCACCAAGAATATTGACTACGTTGCTGAGTCAATTCATGAAGCGGTTACCAAGGTCCAATAATATGCCTGTCTCTCTAACTGCCTGCCTGTTTGAATGTGACAAAGGGGGTGTTTTCAGGTTGGGTCCTGAAAGAGTGAATcacatctctctctgtttcttacacacacatgtttatttacttacttctCAGTCCTCTGTACTTTCAGCACTCCAGCAACATGGGCTGGTCTCACGGTCAGTGTAGATGTAATACACATTCAAGGCTAAGTAGTTGTTCCAAGAGAACAGAACTGTGATCCTGTCTGGTCTTCCTCTCAGTTGTGTTCATTTTGCACTAGAGAATAATCTGTACTTCTTCAGTTGCATCCTGTAGTGGTCCATTAACCATTTTCAGCTTTCTGAttgaactaaaaaaaagcaCCTTTTTTGTTGTAGAACTGCAGGTATTGAGTGACTTACTCATATAAAGTGAGATACGTTAATTTATGATGTCCGATTGACTGATTTCAAGCTCTGTCTTTGTTTGGTGCACATTTCTGCTTAAACAAGGAAGCAAAGTATACTATAACTTGACAAAAAAATAACCTAAACTTTTAATTGTATCTTAAACTAAACTGATTGGATTATTATCAAGTTTGGAATGTAATCAATAGTgaattagtattttattgaacacatttttttcaacTATGTACTTAATGAAGGAGTTtgcttaaaaactatttaaactatCAATTATgacacattttaatatgttcATGTCTACTCATAGTAATAGGACTTAATGTGCTATAATTAACCTTTCCTTCAGACTACCCTTAAAACTAAGTTTAACCTACATTGATTATATTCACACAATTACCCAGCATTCccattttattaattgttatattatatgttaatcATGCTCATGTTCACTGTAAAGTGAAGTAAGAACAAATGCGTGTTTTGTTTAAATGGTTCCAGAGGTTCAGGGCTTGGCAGTGTCTTTCGCACTTTAAGTGTTTGTTCAGGGTGTCTTTAGTATTTGCTGCTTTGTCCTTCCACCTCTCCCAAAGCTCTGCATGTGTGTTTAGGAAAATGCCGTCAGTGTCAGTAGCTTTGGCAGATCTGTACACCTGCTAGGATGAGTACGGTTCACCCTTTGGCCGTGTTGTTgcttaataaactaataaagaaCACAAATctgtctcagaaaaaaaaaatcctaaaagttttcaatgtggaaaaaatgtatgtaaaaatatatgcaCACAATTTAACGACACAAAGTGAGAAATGCTGATGGAAGGCCTTTGAAATAAACATTATGTGAACATGTGAAACAT

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295590 lncRNA upstream 8394 20082601 ~ 20082817 (+) True G217887
TU295578 lncRNA upstream 15298 20074861 ~ 20075913 (+) True G217875
TU295569 lncRNA upstream 84003 20006953 ~ 20007208 (+) True G217868
TU295561 lncRNA upstream 85764 20005052 ~ 20005447 (+) True G217861
TU295502 lncRNA upstream 284128 19804810 ~ 19807083 (+) True LOC111195994
TU295606 lncRNA downstream 95701 20196804 ~ 20202426 (+) True G217902
TU295721 lncRNA downstream 341906 20443009 ~ 20443278 (+) True G217978
TU295772 lncRNA downstream 1028334 21129437 ~ 21134440 (+) False G218022
TU295771 lncRNA downstream 1032620 21133723 ~ 21134440 (+) True G218022
TU295780 lncRNA downstream 1052647 21153750 ~ 21154056 (+) True G218025
XM_007240378.3 mRNA upstream 71767 20008170 ~ 20019444 (+) True slc25a28
XM_007240382.2 mRNA upstream 286480 19774316 ~ 19804731 (+) True LOC103037144
XM_007240386.3 mRNA upstream 703220 19384149 ~ 19387991 (+) True marveld1
XM_007240388.3 mRNA upstream 716400 19372573 ~ 19374811 (+) True mettl18
XM_022684799.1 mRNA upstream 745807 19323906 ~ 19345404 (+) True rrp12
XM_007240373.3 mRNA downstream 44739 20145842 ~ 20222597 (+) True hpse2
XM_022684809.1 mRNA downstream 135957 20237060 ~ 20251768 (+) False hps1
XM_007240371.2 mRNA downstream 136839 20237942 ~ 20251768 (+) True hps1
XM_022684810.1 mRNA downstream 160773 20261876 ~ 20266780 (+) True ankrd2
XM_007240369.3 mRNA downstream 191048 20292151 ~ 20295951 (+) True LOC103033039
TU295577 other upstream 16868 20020414 ~ 20074343 (+) True G217874
TU295347 other upstream 745810 19342994 ~ 19345401 (+) False rrp12
XR_002651927.1 other upstream 887695 19167863 ~ 19203516 (+) False LOC103040131
TU295009 other upstream 1244183 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 1346980 18743233 ~ 18744231 (+) False LOC103030769
TU295704 other downstream 311141 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 1959863 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other downstream 1959864 22060967 ~ 22096652 (+) False mark3
TU296278 other downstream 2116196 22217299 ~ 22218860 (+) True G218351
TU296281 other downstream 2117014 22218117 ~ 22218860 (+) False G218351

Expression Profile