RNA id: XM_007247506.3


Basic Information

Item Value
RNA id XM_007247506.3
length 3178
RNA type mRNA
GC content 0.45
exon number 6
gene id ccdc28b
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38917631 ~ 38930759 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCTGCGTTGTCTGGGGATGGGGCGCGCTGTCTCTTTAATCGCTGAGCTGGAAATGGCGACACGGCTGGGTTTATTCCTCGTTGTTGGAGAGAGAGTCCGCGGGCGGAGAGCGAGgatttaaactgctgtagtgttTCTGTAGCGGATCCAGCGGAAGCGGCGGGGTCGCGGATCTCCAGACTGCGGCGATGCTGAAGCCAGTCCTCCACTAAAGCCCGGAGATCACCGCagagcagcggcagcagcagccgGTAGTGGCAGGTGACGTTTAgcagacacacaaagaaaaacagaCGACCAAATGGAGGACAAGAGGAAGAAGCGGAGTCCCAAAGTTTCACTCCCCCAGCCCCCGCCTCCACCCATCAACCCCCGCAAACTCTCCGTCCTCCCGGCCAGCAAGAGCGCCACCTTCTCCCTGGGCCTTCCCCAGCCGCCATCACCTAAACCCAGGGGCAAGTTCAAGAGGTCTGTGGGGGCAATGGGAGCAACAAAGGAGGTCCTGACTGTACCTGTGGTCCCTCCTAAAGCCACCAGCAGGCCTCACAGAGAGAAGCCACGAGCACCTCAGCCTGCCGGCCCCAGCCACATGTCGCAGTCCTCCTCCCCCCTCCAGCATTCCTTCCTCACTGATGTTTCTGATGTGAGAGAGATGGAAGGCGGACTTCTCAACCTGCTCAATGACTTCCACTCAGGAAAACTGCAGGCTTttgGGAAGGTGTGTTCGTTTGAGCAGTTGGAGCATGTGCGGGAGATGCAGGAGAAACTGGCCCGGCTGCACTTTAGTTTGGACAGCCATGTAGAGGAGCTGTCTGAGGACCAGAGGAAAAGTGCTTCTGACCGCAACCTGGAACACCTGCTCAGCAACCTGGAAGAACTCAGCAGTTCAATACAAAAGTTGCACCTGGCAGAGAATCAAGACTTGCCCAAGACCTCTGGTCCCTGAAAGAcaacacacagcaaacacaccAGCTGCATCCTGAACAGGCAGGAGATGCTATTACCATGGCTACAGCTCCACCTGGCTATCTTACACCTGCGGCTGCTGTACTGGTCAAGAAACCTGACCCGCTACCAAGAACCTGCCAAAGCACAGTGTCTGAAGAGCTCAAAAGTCCTCTTTCCGTGTATACCATTCAAACCCATTTGCTTCAGGCTTTTTACAATGGAGTGAAAAACGCTTTGTCCACTTCACTTTCAGTTTTGTAGTTGATTGTAGGCTGTTTTTGGTAGGTAAATGCATTATTGAAGGTTTATGTTCTGTGAAACTATCGTGGGGTCAGTTGCACCAATATGTTTGAACTGTTTGGTCGTAGTCAGTGTTCATGGGAAGTAAATTCTGATTAAAACTGAATGAAAGTTTTCCaagtaatctaaaaaaaaaaaaataggttgaGTTGCACAACCTACTGATGCTGTGCCCACTAGGGCAGGGGGACACTATCAAAAATCTTTTATCATTTTCGGTAGGTTTCTCAACAATTAAcgattttacacacaaaaaaatctttttacatcaatcaatgaaattaaataggatGGAATTCCAGATTAACCCCTAAGTAGGAGGTACGCATTGATGTCACATTCCAACCGGAACACAACCAATTATTCAGACTGAGTGGCAAAACATTTTACAACTTGTTTCTTTGGGGAAACGGTCAAAACGGTTATTTctagcatcacagtgtgctctGTGAAAAGCGCAGTGATTCTGTTCCTATACATTAGTTCACAGGCGCCTTGCGCTGAtcatcaccttttggagtgatgaggagagagtgcgccatctacccacccagagagtacaaggccaattgtgctctcagggctccggcagctgatggcaagctgcatgaacaggattgaACCCAGCGATTTCCCAATCATATTGGCATCGCTTTAGACAGCTGGAACACCCAAGGCCATTATatgctttaattaaataaaaaaatctgtcagAATGACCAAAGAATTCATGGATTTCCATGGATGCTTGggaaatgcattaataatatgCTATGTTATtatgtaattagtaattagtataaactctgattaaaaacacaGCGCTAAATACATATTTGGGTTGCTGGATTCCTGTTGGAGCTGTGAATTGAAGCAGTGCAGTTGCTAACCACGTCTTTAGTTGCTGTCAGTCTGTAACAGAATTGATCTGATTGTTTTTTGAATCTGTTTCTACAGTCAGTCACACAATAGTTGCCACTCAGTCTGTCTTTTTGCCACTCAATAGGCGTATCTGCATTAACTCACCAAACTGTGATGTCACATGCATACCCAGGGAAGTGTTCCTTTAGCCAATAAGGAGGAATTAACTGGTTGTTCGAAGTACAGGCATTAAATGCTTGTGGATGATATCCAAGCATTATGTTAGTATGTTTTGGATTGCCTAACACATGGTCAAGAACAACATTGCAATGAGCTCCAGCTATGCTACTACAAAGACATTGTTTATATGGCTGCTTTCTTCCATTACTCATTAAGTAGTTCCCTATTAAGCCATGAAAACAGATATTTTTCCTTGTAATTTCAGCATTAGCTGAAAAGctattaaaaatatactatCACTTAGTAGCCTGTTACTTAGCAAAACCGCTAAGAGCATATACCTCCTGATGGCAAGCTAGCATGCTACTTCCCTTTGCTGGCTATTGAACCAAAAAcgtaaacaggaaaaaaaaaaacttatattatataaatgtaaattagcAGGGTTGTATAGTCCTTCTAAAGCCATACAGGTAGAAAATAACAGCATAATAAAATACAACCAAAATGGCTCAAGACCAAGCTTTAGCCTTTAGTACAGGTGCGGCTGGCCCTTATATGTCTCCTATACAGcaaattgtttttacatttttgccaAAATCAATACATATCATAATCATGTATTTGTAGCCCCCATGATGTTCTTGTTTAGTGTGTGCTTCatctgttttaacatgtttaacatTTTGTAAAGCGTTTTAAAATGGTAAAGCGGTACAGTAGCTGTAGACTCGCTCAGGACAATGATTGGACCTTAAGGTGCCTCTCCTCAATTTGTAGCAGAAACTGGAATATTTTAGTGTACACTCTTTGGAAACGTTTCCAGTGGCCTACACTGGAACACAAGGTTTTTACCCACGTATGAATAATCATTCTTGATATTGAG

Function

GO:      GO:0042384

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301805 lncRNA upstream 24300 38890734 ~ 38893331 (+) True G222454
TU301797 lncRNA upstream 58495 38858772 ~ 38859136 (+) True G222449
TU301794 lncRNA upstream 70337 38846577 ~ 38847294 (+) True G222447
TU301788 lncRNA upstream 92552 38822740 ~ 38825079 (+) True G222442
TU301781 lncRNA upstream 119212 38798089 ~ 38798419 (+) True G222436
TU301823 lncRNA downstream 47490 38978249 ~ 39058910 (+) True G222465
TU301984 lncRNA downstream 230728 39161487 ~ 39161688 (+) True G222589
TU301991 lncRNA downstream 243423 39174182 ~ 39174576 (+) True G222595
TU301999 lncRNA downstream 340503 39271262 ~ 39271357 (+) True G222603
TU301997 lncRNA downstream 343779 39274538 ~ 39274832 (+) True G222601
XM_007247508.3 mRNA upstream 1660 38907566 ~ 38915971 (+) False tmem39b
XM_007247507.3 mRNA upstream 1660 38907567 ~ 38915971 (+) True tmem39b
XM_007247514.3 mRNA upstream 18798 38894873 ~ 38898833 (+) True oip5
XM_007247511.3 mRNA upstream 29092 38885274 ~ 38888539 (+) True ndufaf1
XM_022685086.1 mRNA upstream 45487 38860613 ~ 38872144 (+) False golga5
XM_007247505.3 mRNA downstream 1916 38932675 ~ 38940265 (+) True iqcc
XM_007247504.2 mRNA downstream 10494 38941253 ~ 38973109 (+) True dcdc2b
XM_022685091.1 mRNA downstream 121737 39052496 ~ 39152430 (+) True LOC103040939
XM_022685096.1 mRNA downstream 266948 39197707 ~ 39271138 (+) True LOC103047486
XM_022685097.1 mRNA downstream 404522 39335281 ~ 39371357 (+) True LOC103047800
TU301804 other upstream 18812 38895102 ~ 38898819 (+) False oip5
TU301771 other upstream 173449 38735959 ~ 38744182 (+) False LOC103040744
TU301271 other upstream 1909766 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 1909766 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 1929977 36976443 ~ 36987654 (+) False mnat1
TU301994 other downstream 266957 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 747743 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 747743 39678502 ~ 39714015 (+) False G222694
TU302391 other downstream 1400745 40331504 ~ 40339211 (+) False zfyve21
TU302370 other downstream 1419048 40349807 ~ 40352656 (+) True LOC103047655

Expression Profile