RNA id: XM_007247511.3


Basic Information

Item Value
RNA id XM_007247511.3
length 1363
RNA type mRNA
GC content 0.47
exon number 5
gene id ndufaf1
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38885274 ~ 38888539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTTTCCGTACGGGCTGTTTATGAGGGAGAGCGCAATGGCAGCCTAGAGGAGAGAGCACAGGGTGTAGAACTAATGCAgcgtttatttaatttaacctaTTTATTTCATCCTATGCGTGTTTAATAGTACTGTGGATTAATACGAACTTTATGTCTAATCTTTTAAACCGGCCGCTGGAGGATTTTGGGATTGTGTGTCTATCGTGTCTGTGAGTGTCAGTGTTGACCCGCATCACCTAACATTTAACAAGCTGGGCTCCACATATTTTGCGTAAACTTTGGCAGTCATGGCTGTGTCCAGGGTAACACTCCAGACTCCAGCAGGAGTGTGTGGCCTGTTCAGGAGACAGCTTCTCCAGCCCAGCCTCTCACATCCAACCATCCTGAGCACCAGGAGTATCTATGGAGAATACAAGAGACCAGGCCAGCCTCCAGACAAACGGTGGCCCTGGGAGAAGATCCGCTTTGACTTCTCTAAAGGAGTTGAGGGTATACAAAAGCACTTTGGTCTGCTGAAGGATGAGTTTGTGGGCAGATTGAGGGGGCCTGAGGGTCGGCCCTTATTGGACCAtatgctggagcagacactggTGCAATGGGAGTTCCGGGGGCCAGAGTCTCTGGATCAGTGGGTGGTGTCCTCAGACAAAGAAATAGGGGGCCAGAGTGAAGCATACCTGAAGCTGGGGAAAAATAACACTACCTGCATGCTGTACGGGACCCTGTGCTCGGTTCCACCTCGAGACGGGGAGACACGTTACAGTGGGTACTGCACACTGCGCTCCAAACAGACCCTGCTCTCATTTGACAGGAAGAGGCATTTTGATTGGTCCACATTCAACACCCTATACATTCGTTTCCGCGGAGATGGGAGACCTTGGATGATTAACATTTCAGCAGAAATGTATTTCTCCCACaacaaaaatgacatttacaGTTACTTCCTGTACACCCGAGGGGGTCCGTACTGGCAGGAAGTCAAGATTccattttcaaagttttttctcTCAAGTCGAGGAAGAATACAAGATGACCAGCACTGTCTCTGGTTGGACAAGGTGAACAATATTGGCTTCACACTGGGAGACAAAGCTGATGGCCCATTTCAGTTGGAGATTGACTTCATTGCTCTGTGTATTGACCGTGCTCACACTGAGGAGTTTGCATATGAAAAGTTTAAAAGGAACCCCGAGGTCCCCTAGGTGGCTGCAGGTGGACTCTACAAAATAAACAccttaatttattcattcataaggACTGTTCAACTGAAACGTAATGTAATACACGTTTACTCTATTAAAAAGCAGACAATGTACAAAACAAATCATTTAATAGCaaataaaaagcagattttaCACCGga

Function

GO: NA

KEGG:

id description
K18159 NDUFAF1, CIA30; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301797 lncRNA upstream 26138 38858772 ~ 38859136 (+) True G222449
TU301794 lncRNA upstream 37980 38846577 ~ 38847294 (+) True G222447
TU301788 lncRNA upstream 60195 38822740 ~ 38825079 (+) True G222442
TU301781 lncRNA upstream 86855 38798089 ~ 38798419 (+) True G222436
TU301769 lncRNA upstream 152752 38732270 ~ 38732522 (+) True G222427
TU301805 lncRNA downstream 2195 38890734 ~ 38893331 (+) True G222454
TU301823 lncRNA downstream 89710 38978249 ~ 39058910 (+) True G222465
TU301984 lncRNA downstream 272948 39161487 ~ 39161688 (+) True G222589
TU301991 lncRNA downstream 285643 39174182 ~ 39174576 (+) True G222595
TU301999 lncRNA downstream 382723 39271262 ~ 39271357 (+) True G222603
XM_022685086.1 mRNA upstream 13130 38860613 ~ 38872144 (+) False golga5
XM_022685087.1 mRNA upstream 13130 38861699 ~ 38872144 (+) True golga5
XM_007247516.3 mRNA upstream 141090 38735939 ~ 38744184 (+) True LOC103040744
XM_007247517.3 mRNA upstream 196659 38679629 ~ 38688615 (+) True LOC103041043
XM_007247518.3 mRNA upstream 196659 38679629 ~ 38688615 (+) False LOC103041043
XM_007247514.3 mRNA downstream 6334 38894873 ~ 38898833 (+) True oip5
XM_007247508.3 mRNA downstream 19027 38907566 ~ 38915971 (+) False tmem39b
XM_007247507.3 mRNA downstream 19028 38907567 ~ 38915971 (+) True tmem39b
XM_007247506.3 mRNA downstream 29092 38917631 ~ 38930759 (+) False ccdc28b
XM_015605415.2 mRNA downstream 29092 38917631 ~ 38930758 (+) True ccdc28b
TU301771 other upstream 141092 38735959 ~ 38744182 (+) False LOC103040744
TU301271 other upstream 1877409 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 1877409 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 1897620 36976443 ~ 36987654 (+) False mnat1
TU301085 other upstream 2476233 36403148 ~ 36409041 (+) True G221878
TU301804 other downstream 6563 38895102 ~ 38898819 (+) False oip5
TU301994 other downstream 309177 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 789963 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 789963 39678502 ~ 39714015 (+) False G222694
TU302391 other downstream 1442965 40331504 ~ 40339211 (+) False zfyve21

Expression Profile