RNA id: XM_007247518.3


Basic Information

Item Value
RNA id XM_007247518.3
length 1817
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC103041043
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38679629 ~ 38688615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAGTTACCAAATCTAAACAGCCCCACGGATTCGCATCAGCAGTCACACGGCTGCAGAGAGGCTTGTTTttgaggatttctgaattctccttgtttttttttttttattgagtttttatttgtaaaggATCATGCTCGCTGTCGTGGTGGCAGGTTTCGGATTCGTAGCTATAGTGTTGAGACTGCTGTCCTCCCACATCAGGAAATACGCAGCAGGCGGAGTGTGTCTCTCCACGGCACGTTTGGATGGGAAAACTGCACTGATTACAGGAGCGAACAGCGGGATTGGGAAGGAGACGGCCGTGGACCTGGCCTTGCGGGGTGCACGGGTGATCCTGGCCTGTCGGGATATGGAGAAAGGTGAGGACACGGCCGCAGAGATCCGCAGGCGGGTGGGTGGGGCTAAGGTGGAGGTTCGGGAGTTGGACCTGGCTGATACCCGCTCCATCCGAGTCTTTGCACAGAGATTCCTCAGAGAGGTCAATCACCTGCACATCCTGATCAATAATGCGGGGGTCATGATGTGCCCTTACATGAAAACAGCAGATGGCTTTGAGATGCAGCTGGGCGTCAATCACCTCGGTCACTTCCTGTTAACCTACCTGCTGATTGGCCTGCTGAAGCGCAGCTCCCCGGCCCGAGTGATTGTGGTCTCGTCTTTGGCACACTACTTTGGCTGGATCCGTTTCCACGACCTTCACAGCCAGGGCAGCTACAACAGCGGGCTGGCCTACTGTCAGAGCAAGCTGGCCAACGTCCTCTTCACCAGAGAGCTTTCTCGCAGACTGACAGGTTCAAATGTGACAGTGAACTCAGTGCACCCAGGGACAGTGAAGTCGGAGCTGGTCCGTCACTCCACAGTGATGTCCCTGCTGTTCACACTCTTCTCCATGTTCCTGAAAACACCGCGGGAGGGTGCGCAGACCTCCATCTACTGCGCCACAGCCGAGGAGCTACAGTCCATCTCAGGAAAACACTTCAGTGACTGTGCTCCAGCCTCGGTCGCTCCTCAGGGCCGCTGTGAAGAAACGGCTCAGAAACTCTGGGATGTCAGCTGTGAGCTGCTGGGCATCGAATGGGACTGAAATCATTCCACCATCCCACCCCTCCCCCGTCTGTCCCTCGCTCCATCTGAGCCACATCAGATCACACTGTACCTCATTGTTTCACACATGTTGACTTATGTTGATATTCCCCTTCCTTATTTAAAGCCCTATAAAGCCCTGCTGGAGCTGGATTAGTTATCCCAGGTTGTGAGGAGGATGTGGGGGGTAACATATTTCTATCCAGATTTAATTGACTGATTGGCAGAAGAAAAGGAACGCATTATTTACTGCAGACAGTTATTTTAATAGAAGATGTAAGAGGAATTATTAAAATGACCTCTCTGGGTGAAACTAATCCAGCTCAGCGCCTTTACACTAcacacccccacccaccccctcAGCCACCCACTCACCCACCCTGTTCCTGTTCTACCATTTGCCAAACGCCTCGCTGTGTCTGTGAACCTGCGGCCGAGCACTCACTGCCCGACACTCAGAGGTTGAACAGCGTTCAGAAGCTACACTCAGGCTCCTGGCTTCGTCCGAAGGTGTGGACCACTGTATTAATATTTCTCTCAAGTCGTTCGTCCACTGGGAGTTCGAATGTGGATCGGAGTCGTTTCCATTTCATGACCTCCACACTGCTGCTGCCTAGAACTGTGCTGAGGTTTTTATACAGATGTGAACATGCCTTTTTACTATTGTTACATTCATGACCAGAGAACGAGatttgattatattataataatatattgtgtgaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301751 lncRNA upstream 1118 38675847 ~ 38678511 (+) True G222413
TU301757 lncRNA downstream 2133 38690748 ~ 38691746 (+) True G222415
TU301768 lncRNA downstream 43125 38731740 ~ 38731940 (+) True G222426
TU301769 lncRNA downstream 43655 38732270 ~ 38732522 (+) True G222427
TU301781 lncRNA downstream 109474 38798089 ~ 38798419 (+) True G222436
TU301788 lncRNA downstream 134125 38822740 ~ 38825079 (+) True G222442
XM_007247521.3 mRNA upstream 21287 38648585 ~ 38658342 (+) True arg2
XM_007247526.3 mRNA upstream 234931 38436569 ~ 38444698 (+) True LOC103043501
XM_022685079.1 mRNA upstream 254560 38359612 ~ 38425069 (+) False sobp
XM_007247516.3 mRNA downstream 47324 38735939 ~ 38744184 (+) True LOC103040744
XM_022685086.1 mRNA downstream 171998 38860613 ~ 38872144 (+) False golga5
XM_022685087.1 mRNA downstream 173084 38861699 ~ 38872144 (+) True golga5
XM_007247511.3 mRNA downstream 196659 38885274 ~ 38888539 (+) True ndufaf1
XM_007247514.3 mRNA downstream 206258 38894873 ~ 38898833 (+) True oip5
TU301271 other upstream 1671764 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 1671764 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 1691975 36976443 ~ 36987654 (+) False mnat1
TU301085 other upstream 2270588 36403148 ~ 36409041 (+) True G221878
TU300884 other upstream 2623811 36054875 ~ 36055818 (+) True G221737
TU301771 other downstream 47344 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 206487 38895102 ~ 38898819 (+) False oip5
TU301994 other downstream 509101 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 989887 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 989887 39678502 ~ 39714015 (+) False G222694

Expression Profile