RNA id: XM_022685079.1


Basic Information

Item Value
RNA id XM_022685079.1
length 3815
RNA type mRNA
GC content 0.56
exon number 7
gene id sobp
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38359610 ~ 38425069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGTACAGGCCACGCCCCCTTTCCCCGCGCGTCTGGCCACGCCCCCCTGTCTGGCTGACTCTCAGAGCAGGAGGAAGGCTCGTctccacacacacgcacgcgcttacgcacgcacacacacaccacacacacacacacagggctcaCACACGCGCTTAGAGTCGAGAGGAGAGCAGAAGATGGCTGACCGTACCGGGCAGCGCGCGCtcgcggcagcagcagcatcccCGCGGCTCCGCGCACGTGCGCCTTTCGCCCTCGCGCAACTCTGAAACGCGTCTCGCGCTCGAAAGGGGCGGGGAGGGGAgctttcttatttttccagTCGGAGAATAAAGGAGGAGGAATTAAGACGCAGCAGCAGCCGCCCCCCGCGCGCGCGCCATGGCTGAGATGGAGAAGGAGGGAAGACCCCCAGAAAGCAAGCGGAGCCGGAAACCCGCGCACCCCGTCAAGAGGGAGATCAATGCCGAGATGAAGGTCCCAGCTGAGATGCCCCTCCCAGGGGTGGGGCAGAGGGGCGGTCTCCATGGCAACCTGCCTGATGTAATGAGTTTTGCTGAGAACACGATGAATGAGCTGCTGGGCTGGTACGGCTACGACAAGGTGGAGCTACGAGACTCGGACGACCTTGATATACGCAACTATCCTGACGGAGAAATCCGACAGCACATCTCTGTGCTGAAAGAAAACTCTATGCCAAAAGCGTGCGTGTCCGAAAACAGCACTTCCCCTCCTCACGCgaacagctccagctccacGCCCACACCGCGGAATGGAGTTGCCGCGGAAACGGCGGCTAACCCCTCCTCCTCAGTTGCCAAGGAGCAAGGGGGCATGCCAATCATAGTGCCCCTGATACCACCCCCTCTCATCAAACCACCAGCAGaggaGGATCTGTCTAACGTTCAGATCATGTGTGCTTGGTGTCAGAAGGTCGGGGTGAAGCGCTATTCTCTCAGCATGGGCTCGGAGCTGAAGAGCTTCTGCAGCGAGAAGTGTTTTGCAGCGTGCCGCCGCGCCTACTTCAAACGGAACAAGGTGTGTGACTGGTGCAAGCACATTCGCCACACTAAGGAGTACCTAGACTTTGGGTCAGGTGAGAGACGTCTGCAGTTTTGCAGTGCAAAGTGTCTGAACCAGTACAAGATGGACATCTTCTACAAAGAGACTCAGGCAGCCCTGCCAGCTGCTCTGTGTAACCCTGTTCATCAAGCTGGGGAGGGTAAGTCAGAGGGAAGCCCTGGGGTGCAGCTCCTTACCCCTGAGTCTTGGAGCGCTCCTCTGAGTGAACTACGGGCTCGCAAACCTCCCTCACCAGGGGGCGCCACGTCAGGAGCCGGTCACTCTGGGTCAGCGTCGGGATCACCCTCCGAGCACGGAACCGCGTGttcatcttcttcatcttcttcgtCCGCGAAAATCCCCACGCCGAGGCCTCATGGAAGTCCGACGTTACCACATCCCCCTCCACCACCCCCTGGACCTGGACTCCACCCACCACTTGGGATGCCACCTGGCAGTCCTCCCATGGTGATGACGCCTCGTGGTCCAATGCCGCTCCCCCTCTTTATGGAGCACCAAATGATGCAGCAAATGCGCCCTCCATTCCTTCGGCCTCCCGGACCCAACAGCCCGCTCTCTAATCCCATGATACCTGGCATCGGcccaccccctcctcctcccagGACCTTGGGCCCACCGTCAAGCCCTATGCACCGACCCCTTCTCTCACCCCATGTTCATCCTTCCTCCACGCCTACAATGCCAGGTAACCCACCTGGAATGATGCCTCCTCATCCGGGTGCCCACATTCCCGGACTGCCCTTCCCTCCAGTTAACATCATGCCAGCTGGGCCCATTCCAATGCCACCTATGATGAACTTTGGCATGCCATCGCTTGCTCCCCTGGTGCCCCCTCCAATGCTCTTAGTGCCGTATCCTGTAATCGTGCCCTTACCGGTGCCAATACCCATCCCTATTCCCATCCCTGTCGGCCCAAAGGCATCAGGTGATCGACCAGGGAATGACGGGACACTTCCGGAAGTTTCCGGTGATCACAGCTCCTCGCAGGACTTGCCTTTCTCCCCTGATTTGCCCAGAGGAACAGAAAGCCGAGTTCATAAGCAGGGTCCCTCAAGCTCGTCCATGCTTTCACCAGGAGTGTCCAGTCAGACAGAACGGGGCCGGACAAGCATGATGGATCTCAACGTTAAAACAGAAAGCCCTGGAAGTGGAAGTTCCACTTTATCAAATTCAGGATCGCCTACAGACACACCAGCAAATGGAATAATTGATTTAACGACAAATCGTCGCTCAAGGCAGCAGCAGGTCATCCAGCGGGCAGTGCCATGCGTGCAAGTGAAGCCTGAGCCTGACTTGACTCCACTCACAGGGCATGCTGTGCCACAGTTGAGTGAATGTGAAGCGAATGAAAGAGACTCTGTTAGCACGGGGCCAGTAGAGGACTTGCACAGAGACAAAGACAGCAAGCCTAATAGCCCACTGGACAATGTGTTGCTGCCGTGTGCTGACCCTTCCTTCTGCAGTGCCACGCCTCCACTCTCTCAACCAGTTACATGCACCCTTTCTACTCAGACAGCCAGCATCTTCACAACAAAAACAGAGCTAGGAACCGCCACACCTTGTAACGTTATTGTCAACGGGGGCTCTGGTTTGCAGCCACTGGAGCCCACAGTCCGAAGCCCTCCTCTGGAACAGCGTCCCCTTGTGGAACCATGCCGCCGGGCAACCACAGTCTGCAACGAGCCAGCAGAAGGAGAGGACCTGAAGGAAAACAGTTGTATGTCTATTGAGAGGGACACAGCAGGTAAGAGAGCATTATCTGAGCAGACCAATGCTCCTGGAGTCACAGGAGATGAGAAGTCCCAAGAGGCGGAGGACGCAGCGTCCGGAGCAGACCACGCCTACGCTCTGCCGCTTATGCCCAAACCAGGCTGCGTCATTCAGCCTGTGCCCAAACCAGCAGAGAAGACGGCAGGCATCCTGCCATGTGGCCTGACTGCACCTCTAGCAGCAGCGGGAGCAGCGGAGCTGGAGCCCCCGCTGAAGAGGAGGTGCCTGCGCATTCGCAATCAGAACAAGTGAAGAGTGAGAAAGTTTTCAGATGCGTACATCTCACCAAAGGGACAAGCagcacagcactgcagcagataCCATTAGTCCTTCCACATCCACCCACATCCACATATGATTACCCACCCACCTGTGCATCATCTAAACGTGCTCTgtactcacaaacacacaacacgtCCCGTCAAACAAATTTTCACCACCTCACAAGGTGACCACACAGTGACCCCCTCTGAATAAATCTCTCTGAGCAACAGAGTATGGGTCTTAATGGCTGTTGAACTTAAACCCTATTCTGGCTCTTCACTGGTTGTGGAGGTCCCCGATTCTTTCCCCTCATCCTGGAATGTATCGTCACATCTGTGCTGAGGTGTCTCCCCGTACAGGACTGGTGAAGCTCTGCGGTGCTGAGGACTGCAATGTACATAAATAGATGCAAAAGGGCCAAAACGTGGGTATCATGCAATCATGAAGAGGTTCGCTTGGCTTGCCAATCAGAAAATGTGCCCACGAATGACTGACAGGACCTGCTCCTGTGCAAGCCCCCGGGGGGCGGGCCTTAAACATGTTGCccaatcaaaaaataaaaataaataaataacataaagcaCTGTGGCCTGCCTCGCAGATGAGCCCCTTAATGATTAAAAgagacaagtttttttttttgtttggtcagAATTCAGACAGGTCTGGTTAGGATAGTATGAGTTATGAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301593 lncRNA upstream 160650 38197603 ~ 38198962 (+) True G222294
TU301583 lncRNA upstream 207473 38151599 ~ 38152139 (+) True G222284
TU301582 lncRNA upstream 213875 38145430 ~ 38145737 (+) True G222283
TU301579 lncRNA upstream 272012 38087304 ~ 38087600 (+) True G222280
TU301564 lncRNA upstream 333750 38025493 ~ 38025862 (+) True G222265
TU301670 lncRNA downstream 3466 38428535 ~ 38434387 (+) True G222355
TU301681 lncRNA downstream 23133 38448202 ~ 38448460 (+) True G222362
TU301698 lncRNA downstream 94867 38519936 ~ 38520856 (+) True G222373
TU301746 lncRNA downstream 237275 38662344 ~ 38663701 (+) True G222411
TU301747 lncRNA downstream 242373 38667442 ~ 38675020 (+) True G222412
XM_022685075.1 mRNA upstream 94099 38260842 ~ 38265513 (+) True c25h6orf203
XM_015605388.2 mRNA upstream 94454 38257503 ~ 38265158 (+) False c25h6orf203
XM_007247538.3 mRNA upstream 284497 38072267 ~ 38075115 (+) True rdh14
XM_022684774.1 mRNA upstream 490339 37866795 ~ 37869273 (+) True LOC111195988
XM_007247539.3 mRNA upstream 704111 37646712 ~ 37655501 (+) True osr1
XM_007247526.3 mRNA downstream 11500 38436569 ~ 38444698 (+) True LOC103043501
XM_007247521.3 mRNA downstream 223516 38648585 ~ 38658342 (+) True arg2
XM_007247517.3 mRNA downstream 254560 38679629 ~ 38688615 (+) True LOC103041043
XM_007247518.3 mRNA downstream 254560 38679629 ~ 38688615 (+) False LOC103041043
XM_007247516.3 mRNA downstream 310870 38735939 ~ 38744184 (+) True LOC103040744
TU301271 other upstream 1351747 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 1351747 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 1371958 36976443 ~ 36987654 (+) False mnat1
TU301085 other upstream 1950571 36403148 ~ 36409041 (+) True G221878
TU300884 other upstream 2303794 36054875 ~ 36055818 (+) True G221737
TU301771 other downstream 310890 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 470033 38895102 ~ 38898819 (+) False oip5
TU301994 other downstream 772647 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 1253433 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 1253433 39678502 ~ 39714015 (+) False G222694

Expression Profile