RNA id: XM_007247542.3


Basic Information

Item Value
RNA id XM_007247542.3
length 6041
RNA type mRNA
GC content 0.46
exon number 15
gene id hif1a
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37099398 ~ 37143669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caGGCTGTCAGTCGGTCGCGCGCTACTAAACCCTGACTGCACGAGCTCACGAGACTGAGGACCATCCAGACGCAACACCATTCAGCCCTGTCCGGAGCTCCCTGCGCGCTCCCGCTGCGGGCACGTGACCGGCCTGCGCGCTCCCGCTGCACTCgcggtgtgtgagtgagaggctCGCGGAGCGGCGGATCCGAGCCCGCGCCGGTGCGCTTGTTTACTGCACGGACTTCACTCGTCACGAGCGGCGGCGGACGCTGATTAGACCATGACGTCAGGAGCCGCACCTGGGAAGAAAAGGGTGAGCTCTGAGAGGAGGAAGGAGAGGTCCCGGGACGCGGCCCGCTGTCGCAGGGGGAAGGAGACAGAGGTGTTTTATGAACTGTCCCGAGAACTACCCCTCCCCCACAGCCTCACCTCCAACCTGGACAAAGCATCCGTCATCAGACTGACCCTCAGCTACATGCGTCTGCGCTCTCTACTGCACACAGatGTGAGTAAGGGAGGTGAGTTGGATTCCCAGTGGAGTGGTTGTTGTCTGAAGGCTCTAGACGGGTTCCTCTTGGTTCTGTCTCATGATGGAGACGTAGTTTATGTTTCAGAGAATGTCAACAGGTGCCTTGGACTTCCTCAGATTGATCTGTCAGGACAGAGCGTGTTTGATTTCACGCACCCATGTGACCATGAAGAGATCAGAGAGATGCTGGTGCACAGAACAgGTTCATCTAAGAAAATAAAGGAGGAGCCGAATACAGAAAGACGTTTTTTGTTACGGATGAAATGCACTCTGACCAGCAGGGGGCGGAACGTCAACATCAGATCTGCCTCATGGAAGGTGCTGCACTGCTCCGGACACATCAGAGCGCCGGTCAGAGTGTGCGTTCAGACAGACGACTGTGAGGACAGAGGTGTTCCAGCATCGTACCTGGTGCTTATCTGCAACCCTATCCCTCACCCAGCCAGCATCGAGACGCCACTGGACTCCAGAACCTTCCTCAgcagacacacactcaacatGCACTTTACCTACTGCGACGACAGgatcAAGGAGCTGCTGGGATATGACCCAAAGGACCTTCTTCAGCAATCTGTGTATGAATATTACCATGCTTTGGACTCGGACAGTCTGACCAAAACTCACCACAACTtgtttgccAAGGGTCAGGCGTGTACTGGACAGTACCGTATGCTGGTGAAGACTGGTGGCTTTGTGTGGATGGAGACTCAGGCCACTGTTATTTACAACAGCAAGAACTCTCAGCCGCAGTGCGTCGTCTGCGTCAACTATGTCCTCAGCGGAGTTGAAGATCCTGAACTtgtcctctctctccatcagtcCGGCTCCATGGTGGTGAAGCAGgaaaagaaggaagaagaagaggaggaaaagaaagaggaggaagaggaggagagagaaaagcagGAGTGCTTTCAGAAAATAGAGACTGCAGTTCTGCAAGATGACCTCAAGGAGGAACCAGAGGTTTTAAATCAGCTGCACTTCAGCAGCGCAGATATAGATGCTGCAGTGCTGAAAGACGTGCCCCTCTACAATGATGTCATGTTGCCCTCAAGCAGTGTCCTGCTGCCTCTTTCACCCCTTTTGCCCCCCACCGATCCCCCCTGTGCCAGTCTAATCAATCCGGACACCACTGCTGCCCAGCTCCAGTTAGAGGACTTCTCCTTCCCGTTATCTTCTGACACAGACACCTCCAGTACAGCAGGGGACACCACTACCTGCTCCACCCAGcCAACTAGTCCACTGACATCTGACCACAGCTACCAGTGTAAAATGAACTGCGAGGAGGAAATCTTCTCCATAGAGGCGGAGACAAAAACCCTACTGGACGCACAGGCAGTGAAGGATTTGGATCTGGAGATGTTGGCTCCTTATATCCCCATGGATGATGATTATCAGCTGCGTGTTCACTCACCACTGCAGTCTGGATGTGTCAGCCAGGTTCCAGCATCTAAACCAGTTCAGATAGATTCAGCACCTCAAGACCAGACACACACCTGcagcaccaacacacacactcaacctgCAGATCCACCTCCACCAGCACAGCCACTGCAGAGTTCCAGCAGGGTGTGTCAGCCAAGCCAAAAACTGCTCAAGAGGAAATTAGAAACGATTTCTCTGTCTCAGGCTGTAGGACTGGTGGTCAGTGACATACCTACAGCAGGTAAAAAGGTCAGAAGGTCAGAGGTGACAGGGTTACAGGCTCTTCCACAGAATACCATGCCAGAGACCGTCACCATACTACTTCTGCCTTCTGATGTGGTAGCCCAGTTGTTGGCTGGACCGTCTGAAGGCCGGACACTTCCTGTGCCCCTGCCCCAGCTGACCCGCTACGACTGCGAGGTGAACGCACCTGTAGCTGGACGCCAGAATCTGCTGCAGGGGGAGGAGCTACTGTATGCCCTAGATTAATGCATTTATGTAGGAACACTGGACACTAAAAAGAGGCATTAATCTTTATAGTTATTGATGTAGACTAGTCAGAGGTGTTGAGACACCCAAAAACAAAGCTAAGGTTTTATTAGCAGAGGGCTGTGCGCTAATGctttgtgtacatttaccttCAACATTTTGGGTCATGTTTTGTTCAATGTTATTATCCCCTTTTGATATACAGAGGtgtttgaaagtttgtgaacactttagatttttttgtttctgcacCAGATATTAACTAAAATCtaacttaaaaattatgggaaaaaaaatccaatattcTTATCTTATCATTTTATGCACAAGAAACGGGAAACTCTTTAGAGATCACAAACTTTCAGGCACTTctgtcaatatttttatattttcagtgCAACTGCCAGCAGTCAGGGAGTTCAGTGATAAAGATTATATCACATTATATGCAGTTAATCCTGTTTTAGTCCATCAGTAACACTGGGAGTGAAAAATAATCTAAGTTTATGTGACAGTAAATGACAGAACTAACGTACAATGTTTACCACTACTGTCAGTTTAACGGACAGCAAATAGATAATCAGTCATAAATCATTCTCATAGTGATTAGGGCTTCTTGTCAGGATGTGGGCTTCTGTTGGCGGCTTCAGTGGGCTTCAATGGAGGGCTTTACGTCAGTTGGCTGCTCAATTGGAGAGTTATGGCCTTGATTCATTCATTAAAGGGTTATGGCTTCAGTTTAGGGCTTCATTCGGGAATGGGGCATCAGTTTATGGTTTCATCTGAGGGTGGTGGCTTATGGATGTTTTTGAAGGTGGTGGCTTAAGTTGAGGTATTTAAGGATTAACACTTCGGTTGACGCGGTAGGGTTACAGCTTCAGTTGAGACTTGATTAGAGGGCTACATCTGCCTTCGACTACTTCATTGGAAGGTTACGGCTTCAGTTAATAGCTTCATTTGAGGGTTATGGCTTTAGTTTAGGGCTTCATTATAGAATGGGGCATCAGTTTATAGTTTCATCTGAGGGTTGTGTCTTGTGGCTGTTTTAGAAGGTTGTGGCTTAAGTTGAGGCTTTATTATAAGATTACCACTTTGGATGACTACTTCTTTATAGGGTTATATATTAATAGAGCTTCAGTTGAGGCTTCGTAAGAGGGCTACATCAGCCTTTGACTACTTCATTGGAGGGTTATGGCTTCAGTTGAAGGCTTCATTAGATAGTAATGGCTTCAGTTGAGTGCTTTATTGGAGGGTTATAGCTTCAGTAGGCTCCTTTGTGAAGGGTTATGACTTCAACTGACTTTCATAAAAGGTTACAGCTTCAGTTGAGGCTTCTTTAGAGGGATACATCAGCCTTTGACTACTTCATTGGAGGGTAATGGCTTTAGTTGACTACTTCATTGGAGGGTAATGGCTTTAGTTGACTACTTCATTGGAGGGTAATGGCTTTAGTTGACTGCTTCAATGGAGGGTTACTGCTTCAGTTGACTGCTTTATTGGAGGGTTATGGCTTCAACTGGCTTCAGTTGGTCTTTATTAGAGGGCTACAACTGCCTACAACTGACTACTTCATTGGAGGGTTAAGGCTTCAGTTGAGGCTTCATTATAGGACTACAACTGCCTTTGACTGCTTAATTGGAGGAATACGGCTTTAGTTGACTGCTTCATTGGAGGGTTATAGCTTCACTTGACTCCTTTGTGAAGGGTTATAGCTTTAGTTACAGCTTCATGTGAGGCTTCATTAGTGGGTTACATCTTCCTTTGCTTTGTTTTGGAGGATTACTACTTCAGTTGACTGCTTTGTAGTAGGCTTCTTTTGGAGTTTGGGTTTAGGATGATGGCTTTAAAGATGGGTTTGGGCTTCAGTGAAGGATTTACTGGAGGGTTACAGCTTTAATCAACTGCGTCATTGGAGAGATACGGCCTGGACTGCTTCAGTGGAGGGCCACAGTTTCATTTGAGTCCTTCATTAGAGTGTTACGGCTGCCTTCGACTGTTTTTTGGAGTGTTACAATATTAATTGATGGCCTCTTTTGAGGCTTATGGCTTCAGTCAAAGGGGTTACTTGGGGTTTATTCTTCAGCTGAGGGCTTCATTGGGGTTTGTGTCACAGTTGAGGGCTTCACTGGGGGGTTTGAGCCTAGGATGGTGGCTTTATTGAGGAATTGGGTTGTAGTTAAGGACTTTACTGGGGCTTAGGCTTCAGTTAATGGTACCATTGGGGTTCATGCTTCAGCTGAAGGCTTCTTCAGTGCATTTTTGCTTTAGTGAAGGGCTTCATTGGGTGATTGGGCCTAAGATAATGGCTTCTTCGGTGGGTTTATGTTTTAGTTAAGGGCTCCATGGGGGTTTGAATTTCAGTTGAGGGctttttttggggttttgggCTTCAGTTGAGGGCTTCTTTGGGGGTTCGGGTTTGGGGTAATGGCTTCATTGGTGGGGTTTATACTTCAGATGAGGGTTCTTTTGAGGCTTACAGTTTTTAGTTGACTGCTTCATAGAATGGTCACAGCTTCAGTTGAGGGATTCATTAGAGACTTACAGCTGCCTTTGACTTATTTTTGAGGCTATGTATTCATTGGGGTTTGTGCTTCAGTCAAGGGCTTCACTGACGGTTTTGGGCTTAAGATGATGGCTTCACTGGGGTATTGAGTTTTGATTATGGGCTTCATTAGGGGTTTGGGCTTCAGTTAATTCCATCATTGGGGAAAATGCTTCAGCTGTAGGCCTTCTTAATGGGTTTGGGCTTTGGTTAACGGCTGCATTGGGGTTTCTGCTTCAACTAAGAGCTTCTGTGGGGGGGTAGGCATCATAGCTACAACATTTTTTATCTCATTACTGATCTCAGTCCAAACATTCCAAAAAATAAAGGCAGTTGATCAGTGCAAATGTATAACCCTTTACAACACACACTTGCCTTCTTAGGAGCACATTGTATGTATATGATGTTTATTCTGCACACAGGTCCAATCGCacaaatgtacatatattttcctgcaaaaagagagaaagagaaaggcttAGCAGCAGCAGTTTATGCGATAGGGTTTTATTAGCCCTGCTGTTTTTATAGTTActgtcaataaaaaataaaaatgttctttgtTCAGCGTCATGATGAAGAGCTTATCTAGTCTGACATGCATTGAATGTATCTGTGTCTGTATTAATTGTAAAGATACGCCATGATTTGTTCTGGTCACTTGTCTGTTGCATGTACTGTGCTGGATTTGATTCGTTTTTTGTAACAGTGTAGTCCATAACCACACGTTCACAGTGGCTGTGATTAATACATTCTGTTTTTGGAGCGAATTAAGATTTGATTTCTGGCCACATTAATGTATGTGTATTACAGCTGTCAGGATGTAAATGGgcatcaattttttttacaaaaaaaagattagatTTTGTTTCCCTTGAGATACATCATTGGGAGTTGACACTCTTAGAATGTTTTTCCGCCCATCATACTGAGATGTGGTATTATTGAACATTATTACTCCTTATATATGGCTAATATTTCTATAAAAGCATAGAATAGACACATTATTTTGCCGCTCCACAGAAAATAGATTGGTGAAATTTACTCAcgtcatataaaaaaaaa

Function

GO: NA

KEGG:

id description
K08268 HIF1A; hypoxia-inducible factor 1 alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301380 lncRNA upstream 46717 37051220 ~ 37052681 (+) True G222103
TU301261 lncRNA upstream 107920 36981075 ~ 36991478 (+) False mnat1
TU301262 lncRNA upstream 107920 36981075 ~ 36991478 (+) False mnat1
TU301263 lncRNA upstream 107920 36981075 ~ 36991478 (+) False mnat1
TU301236 lncRNA upstream 175500 36875240 ~ 36923898 (+) True G221993
TU301413 lncRNA downstream 10563 37154232 ~ 37154626 (+) True G222134
TU301415 lncRNA downstream 11275 37154944 ~ 37155350 (+) True G222136
TU301417 lncRNA downstream 19000 37162669 ~ 37163290 (+) True G222138
TU301418 lncRNA downstream 19904 37163573 ~ 37164290 (+) True G222139
TU301507 lncRNA downstream 241148 37384817 ~ 37389327 (+) True G222214
XM_022685063.1 mRNA upstream 17774 37023337 ~ 37081624 (+) True prkch
XM_022685062.1 mRNA upstream 80096 37001307 ~ 37019302 (+) True slc38a6
XM_022684773.1 mRNA upstream 107914 36976406 ~ 36991484 (+) True mnat1
XM_007247546.3 mRNA upstream 156657 36936061 ~ 36942741 (+) True LOC103023682
XM_022685058.1 mRNA upstream 172001 36899060 ~ 36927397 (+) False ppm1a
XM_007247539.3 mRNA downstream 503043 37646712 ~ 37655501 (+) True osr1
XM_022684774.1 mRNA downstream 723126 37866795 ~ 37869273 (+) True LOC111195988
XM_007247538.3 mRNA downstream 928598 38072267 ~ 38075115 (+) True rdh14
XM_015605388.2 mRNA downstream 1113834 38257503 ~ 38265158 (+) False c25h6orf203
XM_022685075.1 mRNA downstream 1117173 38260842 ~ 38265513 (+) True c25h6orf203
TU301271 other upstream 91533 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 91533 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 111744 36976443 ~ 36987654 (+) False mnat1
TU301085 other upstream 690357 36403148 ~ 36409041 (+) True G221878
TU300884 other upstream 1043580 36054875 ~ 36055818 (+) True G221737
TU301771 other downstream 1592290 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 1751433 38895102 ~ 38898819 (+) False oip5
TU301994 other downstream 2054047 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 2534833 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 2534833 39678502 ~ 39714015 (+) False G222694

Expression Profile