RNA id: XM_007247559.3


Basic Information

Item Value
RNA id XM_007247559.3
length 4481
RNA type mRNA
GC content 0.50
exon number 36
gene id tdrd9
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36735850 ~ 36767233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTCCACACAGTCAGACAGACGACGGGAGCGCGAGCCGGAGGCCGGACGGTTGGTTGGGAGAAGTTTGGCTCCTAACAGTGaatattgttttagtttagtaagTTTTATCGCTGGTTGTTTTAGTTTAAATGCTGGTTTAGAGTGAGCGGTGATGAAGCCGGCTATTACAGCAGAGCAGATAACCAAGTGGTTCACTATCGGAGCTCAGTTTGCTAATGTGAGAATCACTGATGAACCGAAGAAAGAGAGCAGAGCTGATTCAGTCAGCGAGGGAAAGGGGCCTGATCAGAGCAGTCCGCTGAAGGACCAGGGAGGACTGAGGAACCGGAGGGCTGAACTACCCACAGGTCTAGGAAGTCCTCCTCCACCTCTGGCCAGCTACCAATATCCAGCCTTGCCCATCACCAAGAACAGACAGGAGCTGATCTCTCTGATAGAGAATAACTCAGTGGTGATAATCCGTGGTGCAACAGGCAGTGGTACAACGCAGCTGCCTCAGtttattttggattattataATGAGAAGAATGCCTGCTGTAACCTGGTGGTCACTCAGCCCAGAAAGATCGGAGCCTCCAGCATTGCACGCTGGGTTGCACGTGAACGCAAATGCACGCTGGGAAGCCTGGTGGGGTATCAGGTCGGTTTGGAGAAGATGGCGACAGAACACACCCGCCTTATCTACATGACCACGGGAGTACTGCTGCAAAAACTGGTGTCAGCAAAAAGCCTCACAGAGTTTACACACATCTTTATAGATGAGGTGCACGAAAGAACGGAGGAGTTGGACTTTCTGTTACTGGTGATCAGAAAACTCCTACATTCCAACTCTCGATATGTGAAGGTGATTCTGATGTCTGCTACAATAAACTGTGCAGAATTTGCAGAATATTTCGGAACCCCAGTGCGTACTCGGATAAACCCAGCATATGTGTTTGAGGTGGAAGGTGCGCCGTACACGGTGGAGGAGTTTTACCTGGATGATATCCAAAACACCCTGTGCTTGAAAGTGGACACCCCTCACCCTGATGAGCCCAACATTTCTGCAGACATGTATAATGTTGCTGTCAGCCTCATTCAGAGCTTTGATGAGATCGAGGCCAAAGATCAAAGtCGTTCAGCTCAGGATGTGAGTGCATCTCTTCCAGAAAGAGGCAGTGTGTTGGTGTTTCTCCCTGGACTGGCTGAGATTCAGTACATGCAGGAGGCTCTCTCCAAACTCGTCCGCAAAAGGCTGCAGGTTTACCCACTGCATTCCACTGTGACTCTAGAGGAACAGAATGGAGTGTTTCTGGTTCCTGTGCCTGGATATAGGaagATCATCCTGTCCACCAACATTGCAGAGAGTTCAGTCACAGTGCCAGATGTGAAATATGTGATTGACTTTTGCCTGGCACGTCACCTTGTGTGTGATAAAGAGACAAACTACCAGTCTCTCTGTCTGACCTGGGCGTCCAAAACCAACTGTAACCAGCGCAGAGgACGAGCTGGTCGAGTGTCTAAGGGCTTTTGTTATCGCTTGGTGACACGAGAGTTTTGGAATAAGGAAATTCCGGATTATGCCGTGCCAGAGATGCTGCGTTCTCCATTGGCCAGTATCGTGCTGAAGGTAAAGATACTGAACATGGGTGACCCTCGCACTCTGCTGTCCACCGCCCTGACCCCCCCGAACCTCACCGACATCAAGAGGACCATCCTGCAGCTCAAAGAGaTGGGAGCTCTGTCAGTGAGCAGCAGCAGTTTTGATGGTGATCTGACGTTTCTGGGGCGTGTTCTAGCTAACCTGCCGGTAGATCTACACCTGGGGAAGCTGATTGTACTGGGACACGTCTTCGGCTGTATGGAGGAGTGCCTCATCATCGCCGCATCTCTCTCGCTGAAGAGTTTCTTTGCGATGCCGTCTCTGCAGCAGCTGGCTGGTTACCGgagtaaGCTAGCCTTCGCTCATGGTGTTCCCAGTGACTCCATCGCCTTTGTCAATGCCTTTAAGGCCTGGCACACATCCAGAGCCAAAGGAGAGTTCAGGCATCCAAAGgatgagctggagtggGGCAAAGAAAACTGCATCCAGATTAAACGAATCAGAGAGgtgGCTGAGCTGCGTGAGGATTTGACAAAGAGAGTGAATCAATTCAAcatgaacatcacagagagCTCCTCTCCATTAGACTACACCAGCATGCACAAACAGAGATTCATACTGCAGGTGGTGATTGCAGGAGCATTCTACCCAAACTACTTCATCCAGGGGGCTTTAGATGAGGAGCTGGCATCTAAAGAACTGTCAGGAAATGACCCCAGGACCACAGTACTGgtGCGAAATCTGCCTCCTTTTGCATTTCTCTACTACAAACAGCTGCAGTCTCTCTTCAGACAGTGTGGTCAGGTGAAGTCTATCGCCTTCGATGGCTCCAGGGCATATGTGGAGTTCTACCGCTCATCTTTGAGGGGTTCTGGAGTTCTTCCAGAAGTGTCCCTGTCTCTGCTCCTCTCTCAGCAGAGGCTTCCTCTTCAGCTGCAGGTCCATCCAGCAGAAGAGGTTGAGGCTCGGGCTAAGGGCAGGGCCCTTTCATACCTCAAATATGCACGaGTGAATGTGGATTTTCAGAGCCAGACTGTGCACCCTGTTGGAGTCCTGAGCAGCAGCATTGAGCCGGAAAAGCTGCCCCCTAAACAAGTCTTCATCATAAACATCACAGAGGTGGTGGAGGTGGGTCACTTCTGGGGTTTCCAGGCAGATGAGGCCAGCATGGAGAAGCAGAGGCAGCTAACCACAGCGATTAATCAGCTGCGGCTCCGGCCTGTCCCCGTGTCTCTGTACCCCAACCTGCTGTGCCTCGCACCATTCCGCGATATACACACTGATACAGAACCCGAAAACTACTACAGAGCCAAAATACTGCACATACTGGGGACCAATGTAGAGGTGTTTTTTCTGGACTATGGGAACACCTCTCGTGTGCCTTGTGACCATCTGAGAGAACTTCCTGCTGATCTGTTGACTCCACCCTTTCAGGCACAGGAGTTTGTTGTGGCTCGTATGGCTCCTTCGGCCCAGTCCATGATCCTGGGAGATCAGTGGAGCAGTCAGGCCAGGAACCGCTTCATTACGCTGGTCAGCGGACACTCGCTCATCGTCTCCCTCTACTCCATCCTGCACGGAGTCATGCGCGTTGACCTTTACGTCTCCATGGAAACGGGGGACGCCAGTGTGGCCGACTTGCTGGTGCAGGAGGGTCACGCCCGATACACCGAGGAGAGCTTTGAGAGTCAGCAGTCACATGATGTGTTGGTGGGTCTGTATCAGGACCTGAAAGAGGGCACCTTCACCCCAAGCTCTACTAGTAGTTCTTGGCAGAGCAGGAAGGACGAGGAGAAGCAGCTCATTGATGCTCTGCTGCTCTCCTTTTCCAAAAGCAGCCACAGCGCCCCCAAATGCAGGGTCCCTGTGCACGGCCCCTCCAGCCCTCATAAGGTTGCCTTCCACTGCATGAGTGGGATCACGATGTGCAGGTCGGTTAGTATAGAGCGGGACAGTATAAACTCAGTGTTGGTGAATGACCATCCGCAGGACAGTCATGAGAGAATGCTGGTGGCTGCATTCGTTTCACTCAGCTCATCAGGTTCACGTATACTACTGAAAGAAACAACGCTGATGCCTCATATCCACGGCCTCCCTGCCCTCATCACCATGCTCTTCACCCCCATCATGGAGTTGCGTACTGACAAAGAGCGAACCTGCTTCACTGGAGCTCTGTGTGGTCTAGGAGCAAAATCCAGCTCTGAGGAGGGCGTGCTGCTTGAGCACGACATTGAGCTGGCTTTCGACGTCAAGTTTGACGTTGAGGATATTACAGAgatAAATGCACTGAGAGGGGTGATGAACAAGTTGACATGTGAAGGTCTGAATGGTCTCCTGAACTTGGGTCAGGAGCGGATCAGCTGTCTGCAGGACGAAGCTCGGGAACGGCTCATCAGGCTCTTTTGTAAATCTCCCTCGAGAGAGGATCGCCCTGCAGATTATTACGACAAAGCAAAGAAATGGAATCAGgTTGACCCGTCCCAGCAGATGGAGGTTGTCCAGAAGGAAAAGGACAGAGCTACTGGGctcctgtttcagctgcatccTGTAACTCTGCTGAACATGTGAGAGTCTGTGTTACTGTAGTTTCATGTTTCAGCCCTGATTATGGTGTTATTAATCTATTGGTTCTGTTTGGATTGGAGATTTGCAGTTAGAGACTAATCAGAACAGATTAGATTTGTTTCTGTATTGTTGCTTGTTTGAGTTGTGCTGTGGTGACAGCCTCTGCCACGAGATGGCAGTGTTTAAGTTATTTAATAAAGGACGTGTTTATCTCTCTCGGTTGTTGTTGAATaacagcagtagcagtagtaggtTATGATCTATGCATTTGCACTTAATCAGTATGCACATGGGTGTTTATCTGAAGaaataatgcattatttttacttca

Function

GO:

id name namespace
GO:0009566 fertilization biological_process
GO:0030154 cell differentiation biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0071547 piP-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18408 TDRD9; ATP-dependent RNA helicase TDRD9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301207 lncRNA upstream 7761 36726518 ~ 36728089 (+) True G221973
TU301210 lncRNA upstream 7761 36726518 ~ 36728089 (+) False G221973
TU301100 lncRNA upstream 112055 36620288 ~ 36623795 (+) True G221891
TU301086 lncRNA upstream 290478 36443306 ~ 36445372 (+) True G221879
TU301069 lncRNA upstream 345656 36387252 ~ 36390194 (+) True G221872
TU301238 lncRNA downstream 66794 36834027 ~ 36958193 (+) True G221995
TU301236 lncRNA downstream 108007 36875240 ~ 36923898 (+) True G221993
TU301248 lncRNA downstream 121447 36888680 ~ 36897632 (+) True G222004
TU301261 lncRNA downstream 213842 36981075 ~ 36991478 (+) False mnat1
TU301262 lncRNA downstream 213842 36981075 ~ 36991478 (+) False mnat1
XM_022685053.1 mRNA upstream 4419 36704679 ~ 36731431 (+) True kif15
XM_022685052.1 mRNA upstream 4419 36704685 ~ 36731431 (+) False kif15
XM_022685054.1 mRNA upstream 4419 36704685 ~ 36731431 (+) False kif15
XM_007247560.3 mRNA upstream 4419 36704686 ~ 36731431 (+) False kif15
XM_015605416.2 mRNA upstream 4419 36704779 ~ 36731431 (+) False kif15
XM_015605419.2 mRNA downstream 59800 36827033 ~ 36856163 (+) True LOC103026999
XM_015605417.2 mRNA downstream 91719 36858952 ~ 36877930 (+) False pcnx4
XM_007247554.3 mRNA downstream 91732 36858965 ~ 36877930 (+) True pcnx4
XM_022685056.1 mRNA downstream 91734 36858967 ~ 36877930 (+) False pcnx4
XM_022685061.1 mRNA downstream 131823 36899056 ~ 36904868 (+) False ppm1a
TU301085 other upstream 326809 36403148 ~ 36409041 (+) True G221878
TU300883 other upstream 679160 36054146 ~ 36056690 (+) False G221737
TU300881 other upstream 679160 36054637 ~ 36056690 (+) False G221737
TU300884 other upstream 680032 36054875 ~ 36055818 (+) True G221737
TU300860 other upstream 763496 35969989 ~ 35972354 (+) True G221728
TU301259 other downstream 209210 36976443 ~ 36987654 (+) False mnat1
TU301271 other downstream 233852 37001085 ~ 37007865 (+) False slc38a6
TU301269 other downstream 233995 37001228 ~ 37007865 (+) False slc38a6
TU301771 other downstream 1968726 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 2127869 38895102 ~ 38898819 (+) False oip5

Expression Profile