RNA id: XM_007247569.3


Basic Information

Item Value
RNA id XM_007247569.3
length 1070
RNA type mRNA
GC content 0.46
exon number 8
gene id med6
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35376737 ~ 35381446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATGGGCGGGGCTATTGTTAGAGACACCCACTCCGGCGACAAAAACATTGCGTCATCCTCGCGCGTCCTGGGAAACATGGCTGCCGGAGATCTGAGAGATAACCTGCTGGGCATCTCGTGGGTGGACAGTGGGTGGGTGCCCATCCTGAACCCCGGCAATGTTCTCGACTACTTCTCTGAACGAAGCAACCCTTTCTACGACCGAACATGCAACAACGAGATGGTGAAGATGCAGAGGCTGACTCTGGACCACCTGAAtcagATGGTTGGAGTGGAATATATCCTACTTCACGCTCAGGAGCCAATCCTGTACATTGTCAGAAAACAGCAGAGGCAGTCGCCCACACAAGtcATACCTCTGgctgattattatattatagctGGAGTAGTGTACCAGGCACCAGACCTGGGATCAGTCATCAGCTCCAGAGTGttgtcTGCGGTGCATGGTATCCAGTCAGCATTTGATGAGGCCATGTCCTTCTGCCGCTATCACCCCTCTAAAGGCTACTGGTGGCATTTTAAAGACCAGGAAGAACGAGagaAAGTAAAGCCCAAATCTAAGAAGAAAGAAGAGCCCAGCTCACTGTTCCAGAGGCAGAGAGTGGATGCGTTACTGCTGGACCTGCGCAACAAGTTCCCACCAATGTTCTatcagCCTAAACCCGGAGAAAAGCCAATTCCAGtgGAGGTAAAGAAGGAACCAGAGCTGCTGGCAGAACCCACTAAACAAGAGGAACGAGAGACGGCCACAAAAACTCCAGCACCATCCGGACCCAGTAAACCACCACCAGAAAAACGAGCCAGGCttcaataacacacacacacacacacactgctgataaTAGGCCATGTTTTGGCCTTATTAACACACAATTCACAAGGACTATTTATCATTTCTCTCCaacattatttgtttgttttatttctttttttcctcatgTTGAACGTTTATCATGTAAATAGGTGccacatttgtttgtttttgtacacAGTAGACTTTTGTAATAGGTCTGTTTATTGATTACAAAagaattgtaataaaaatactgaacaTGTAATCATGTAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15128 MED6; mediator of RNA polymerase II transcription subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300531 lncRNA upstream 60847 35309502 ~ 35315890 (+) True G221527
TU300523 lncRNA upstream 132786 35199650 ~ 35243951 (+) True G221522
TU300526 lncRNA upstream 158510 35212969 ~ 35218227 (+) False LOC103031497
XR_002651982.1 lncRNA upstream 231815 35135879 ~ 35144922 (+) True LOC111196036
TU300515 lncRNA upstream 322178 35053458 ~ 35054559 (+) True G221517
TU300576 lncRNA downstream 10238 35391684 ~ 35432694 (+) False G221545
TU300577 lncRNA downstream 10238 35391684 ~ 35432694 (+) True G221545
TU300567 lncRNA downstream 61767 35443213 ~ 35459370 (+) True G221540
TU300592 lncRNA downstream 175857 35557303 ~ 35727535 (+) True G221551
TU300640 lncRNA downstream 179387 35560833 ~ 35566330 (+) False G221559
XM_022684768.1 mRNA upstream 28425 35324800 ~ 35348312 (+) True map3k9
XM_022685027.1 mRNA upstream 67826 35234443 ~ 35308911 (+) False slc8a3
XM_022685028.1 mRNA downstream 4257 35385703 ~ 35456493 (+) True pcnx1
XM_022685029.1 mRNA downstream 4257 35385703 ~ 35456493 (+) False pcnx1
XM_022685030.1 mRNA downstream 4258 35385704 ~ 35456493 (+) False pcnx1
XM_022685031.1 mRNA downstream 80912 35462358 ~ 35485086 (+) True LOC103046445
XM_022684769.1 mRNA downstream 137966 35519412 ~ 35556136 (+) True LOC103029802
TU300438 other upstream 351139 35018453 ~ 35025598 (+) True srsf5
TU300434 other upstream 379693 34987028 ~ 34997044 (+) True synj2bp
TU300330 other upstream 1193500 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 1932016 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 2699452 32613474 ~ 32677285 (+) False LOC103038412
XR_002651984.1 other downstream 488572 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 489614 35871060 ~ 35888815 (+) False gclc
TU300860 other downstream 588543 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 672700 36054146 ~ 36056690 (+) False G221737
TU300881 other downstream 673191 36054637 ~ 36056690 (+) False G221737

Expression Profile