RNA id: XM_007247575.3


Basic Information

Item Value
RNA id XM_007247575.3
length 4490
RNA type mRNA
GC content 0.50
exon number 22
gene id actn1
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35152330 ~ 35208826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACAGCGAAGTTTCTGCCCCCAGTTGCTCACGCTGGAGGTTCTGCCTACACGCAGCTAGGCAGAGAGACGagaggaaagagggagagagagagagagagagatagagggagaggaagagagaaagagagagacaggcaggcTGAGGCAGTAGAAGCTACAGTGTCGTTATTATTATCAGCTCGGGTGAGTTGTTCAGAGTGTCGAgtgttcagcagcagcagcagcttctctACCTACCAGCCTCACTTACAGTCAGTATGGatcaccaccaccaacaccatcaccatcaccagcaCTATGATGGAGATGAGAACGACTACATGCAGCAGGAGGACGACTGGGACAGGGACATGCTCCTGGACCCAGCCTGGGAGAAACAGCAGAGGAAGACGTTTACAGCCTGGTGCAACTCTCACCTGCGGAAAGCCGGGACTCAGATCGAGAACATTGAGGAGGATTTCAGAGATGGACTCAAACTCATGCTGCTCCTAGAGGTTATCTCAGGAGAGCGTCTGGCTAAGCCTGAGAGAGGGAAGATGAGGGTCCATAAAATATCAAATGTGAACAAAGCTCTCAATTTCATCACCAGCAAAGGAGTCAAACTGGTGTCTATTGGAGCAGAAgaaATTGTTGACGGAAATGCTAAGATGACTCTGGGAATGATCTGGACCATCATCCTCCGCTTTGCCATCCAGGACATTTCAGTAGAAGAAACTTCAGCTAAGGAGGGGCTGCTGCTGTGGTGCCAGAGAAAAACAGCACCCTACAAGAACGTCAACATCCAGAACTTCCATATCAGCTGGAAGGATGGCTTGGGGTTTTGTGCGCTCATCCACAGACACCGTCCAGAACTCATTGATTACGCCAAACTGCGAAAGGATGACCCCATGACTAACCTCAACACGGCGTTTGACGTAGCAGAGAAATACCTGGACATCCCCAAGATGCTGGACGCAGAGGatATAGTCGGTACGGCTCGCCCGGATGAGAAGGCCATTATGACCTACGTCTCTAGTTTCTATCACGCCTTCTCTGGGGCTCAGAAGGCAGAGACGGCAGCCAATCGGATCTGCAAGGTTCTGGCTGTCAATCAGGAGAACGAGCAGCTGATGGAGGACTATGAAAAACTGGCCAGTGATctGTTGGAGTGGATCAGGAGAACCATCCCGTGGTTGGAGAACCGTGTTCCTGAGAGCACCATGCAGGCCATGCAGCAGAAGCTGGAGGATTTCCGGGATTACCGCCGGCAGCACAAACCGCCCAAAGTTCAGGAGAAGTGTCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAACTGCGCCTCAGCAACCGGCCCGCGTTCATGCCCTCTGAGGGGAAGATGGTGTCGgataTCTCTAATGCATGGGGAGCACTGGAGGGAGCAGAGAAAGGCTATGAGGAGTGGCTGCTGAATGAAATCCGCAGACTAGAGAGACTCGATCACCTGGCTGAGAAATTCCGCCAGAAAGCAGCTATTCACGAGGCCTGGACTGAGGGTAAGGAGGCAATGCTGACACAGAAGGATTACGAGACGGTGACTCTGTCGGAgattaaagctctgctgaagaAACACGAGGCCTTTGAAAGTGACCTCGCCGCCCACCAGGACCGGGTGGAGCAAATCGCTGCCATCGCACAGGAGCTCAATGAGTTGGAGTATTATGACTCGCCCAGTGTGAACGCTCGCTGCCAGAAGATCTGTGACCAGTGGGACGCTCTTGGAGCTCTGACCCAGAAACGCAGTGAGGCCTTACAGAGAACTGAGAAGCTGCTGGAGACGATTGACCAGCTGTACCTGGAGTTTGCCAAGAGGGCGGCGCCATTCAACAACTGGATGGAAGGAGCCATGGAGGACCTGCAGGACACTTTCATCGTCCACACTATTGAGGAGATCCAGggTCTGAGCACAGCTCACGAACAGTTTAAAGCCACACTCCCGGAGGCGGATAAGGAGCGTCAGGCTATTCTGGGGATCCACAACGAGATCGCTAAAATCGTGCAGACGTACCACGTTAACATGGCTGGAACCAACCCGTACACCACCATCAATCCCACAGAGATAAACGCCAAGTGGGACAAGgtaAGGCAGCTGGTTCCTCAGAGAGATCAGGCTCTAATTGAGGAACACGCACGGCAGCAGAACAACGAACGGCTGCGACGGCAGTTTGCTAACCAGGCTAACGTTATCGGACCATGGATCCAGACCAAGATGGAGGAAATCGGCCGTATCTCCATTGAACTGCACGGCACTCTGGAGGATCAGCTGACCAACCTGCGGCAGTATGAGAAGAGCATCGTTAACTACAAACCAAAAATAGACCAGCTGGAAGGAGACCACCAGCAGATCCAGGAGGCCCTAATATTCGACAATAAACACACCAACTACACCATGgagCATATCCGCGTGGGCTGGGAGCAGCTACTGACCACCATCGCCCGGACCATCAACGAGATCGAGAACCAGATCCTCACCCGAGACGCCAAGGGCATCAGCCAAGAGCAGCTCAGCGAGTTCAGAGCTTCATTTAACCACTTTGACCGGGACCACTCAGGCACTCTGGGCGCTGAGGAGTTTAAAGCGTGCCTCATCAGCCTGGGCTTCGATATCGGCAACGACgctcagAAGAGAACAGGCTTGATGGATGGTGAAGATTTCCGCACCTGCCTGATCTCCATGGGTTATAATATGGGCGAGGCGGAGTTCGCTCGGATAATGAGCATTGTGGATCCCAACAGACTCGGGGTCGTGACCTTCCAGGCGTTCATCGACTTCATGTCTCGTGAAACCGCAGACACGGACACTGCCGACCAAGTCATGGCCTCCTTCAAAGTGCTTGCTGGAGACAAGAATTACATCCTGGCAGATGAGCTGAGGCGCGAGCTTCCTCCGGACCAGGCGGATTACTGCATCAGCCGCATGGCGCCGTACACCGGCCCCGACGCCGTCCCGGGAGCGCTCGACTACATGTCCTTCTCCACCGCCCTGTATGGAGAGAGTGACCTCTGAATCCCGACCTGTGACCCCGGAGTCAGCCTGCCTTCTCCTGATCCtgatctctctcacacacacacacattctcacacacacaaacaacctcTGCTCTGCGGCCACTGAGCCGAAGTGACCCAGCCACACTGATCTAAAGCTAACGGTAACCATGGCAGCAGCAAAGCTGATATGCTGAATAAGTTGAAGCAGAATGGTTGAAAAGTAGACACCTACCTGGTAGCTATGttcactaggggtgggaataaagaattaatattgcaataaatcATATTGTTTTGATCGCATTGTATCGATACGTGGCATCAAATAAAGCTATAAACTCCTCTCACTAAGActtactgaagtaaaataaaccaataattcTTGGTATTTGCTTTTTTCCAGAGTATTTGATCAGTTTCAGTAAAACAGTGAATGATGTAAAGTATCACAGAGAATTATATATcgatttatatatctattactACAGAATCATAGTACCATGATAAATTATATTgtaagatgccctgtgattcccacccctactgctCACTGGTTATTGCATAGCTCACTTGCCCTCAGTTCTGTCCCATCAGTGCAACAGTACCAGTACTTTCCACATGTAGCCTGCGCTGGTGGTCCTGCGCTGGTGGTCCTTTGGTGATGGTCCTGCGGTCATTTTGGGCCACTTCATCAGAAACCCCATCCTTCTATCACCGTCTTGCTGGTGTACTGTTACAGACTGTTAATCGTCCTATAGTCCATCCATAGTTTATTATTGGTGTTCTGCTTCTGACCACAGATCTGCTCCTGTACAGGTACCTTTGGCAAGTGGACCTGCTCTCAGTCTAGCACACGCAGCAGTGACACATACACGTGAACAGTCCTtttggtaggtgtttccaataacgTGGCCACTCACTGATATGTGTCACATATCAATTGACATCATATTTAACTAGACAGCAGCATCAAAGTAGCTCTGAATCTCTGCCATGGTTAAGAACCGTTGCCTCTGTATGGCAGGCTGGTCACTTTGAGCTCAGCAGGCCGGAGCAGCTCCTACCAGCATGGCTCAAAGATGCTCGATCCGTTTTTTGTACGCTCCTCTTTACCCCTCTCTCTGCtgcctgtgagtgtgtgcgagtgtgagtgtgtgcgagtgtgtgtgagtgtttgttgtGTCATATACCGACTTCTTGCTCTGTCCCTTTTCTCGCTTCTGCAGCACTGAAAAGCTTCCTCAGCTTTTATACACGGAGAGAAAGAtagcgaaagagagagatagagagaaagagagagatggagaaagagtaTCTTCTGTTTTTacttcatgttttgttttttgttttttctcttcataagaaataaaagttaacatattttattatacagaaCAAAAAAGGTATTTTTCTTCACCtggttaaaaaatgtaaaaaaaaatcaagaaaaaaataaataaatgaggaaAATTGCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K05699 ACTN1_4; actinin alpha 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651982.1 lncRNA upstream 7408 35135879 ~ 35144922 (+) True LOC111196036
TU300515 lncRNA upstream 97771 35053458 ~ 35054559 (+) True G221517
TU300428 lncRNA upstream 169969 34980019 ~ 34982361 (+) True G221447
TU300410 lncRNA upstream 186103 34957895 ~ 34966227 (+) True G221436
TU300412 lncRNA upstream 219045 34932980 ~ 34933285 (+) True G221437
TU300526 lncRNA downstream 4143 35212969 ~ 35218227 (+) False LOC103031497
TU300531 lncRNA downstream 100676 35309502 ~ 35315890 (+) True G221527
TU300576 lncRNA downstream 182858 35391684 ~ 35432694 (+) False G221545
TU300577 lncRNA downstream 182858 35391684 ~ 35432694 (+) True G221545
TU300567 lncRNA downstream 234387 35443213 ~ 35459370 (+) True G221540
XM_022685022.1 mRNA upstream 18337 35115648 ~ 35133993 (+) True dcaf5
XM_007247584.3 mRNA upstream 44089 35036632 ~ 35108241 (+) True pacs2
XM_015605401.2 mRNA upstream 44089 35036632 ~ 35108241 (+) False pacs2
XM_007247585.3 mRNA upstream 44089 35036632 ~ 35108241 (+) False pacs2
XM_007247586.3 mRNA upstream 126732 35018442 ~ 35025598 (+) False srsf5
XM_007247571.3 mRNA downstream 25617 35234443 ~ 35308911 (+) True slc8a3
XM_022685027.1 mRNA downstream 25617 35234443 ~ 35308911 (+) False slc8a3
XM_007247573.3 mRNA downstream 25617 35234443 ~ 35308911 (+) False slc8a3
XM_022685025.1 mRNA downstream 26328 35235154 ~ 35308911 (+) False slc8a3
XM_022685026.1 mRNA downstream 26661 35235487 ~ 35308911 (+) False slc8a3
TU300438 other upstream 126732 35018453 ~ 35025598 (+) True srsf5
TU300434 other upstream 155286 34987028 ~ 34997044 (+) True synj2bp
TU300330 other upstream 969093 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 1707609 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 2475045 32613474 ~ 32677285 (+) False LOC103038412
XR_002651984.1 other downstream 661192 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 662234 35871060 ~ 35888815 (+) False gclc
TU300860 other downstream 761163 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 845320 36054146 ~ 36056690 (+) False G221737
TU300881 other downstream 845811 36054637 ~ 36056690 (+) False G221737

Expression Profile