Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007248551.3 |
| length | 1485 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 7 |
| gene id | LOC103031709 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035921.1 |
| NCBI id | CM008324.1 |
| chromosome length | 46505145 |
| location | 13397781 ~ 13401639 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0036302 | atrioventricular canal development | biological_process |
| GO:0045471 | response to ethanol | biological_process |
| GO:0055003 | cardiac myofibril assembly | biological_process |
| GO:0055008 | cardiac muscle tissue morphogenesis | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0042493 | response to drug | biological_process |
| GO:0030240 | skeletal muscle thin filament assembly | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0003272 | endocardial cushion formation | biological_process |
| GO:0030049 | muscle filament sliding | biological_process |
| GO:0060048 | cardiac muscle contraction | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0070062 | extracellular exosome | cellular_component |
| GO:0031674 | I band | cellular_component |
| GO:0042643 | obsolete actomyosin, actin portion | cellular_component |
| GO:0017022 | myosin binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| id | description |
|---|---|
| K12314 | ACTC1; actin, alpha cardiac muscle |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU293297 | lncRNA | upstream | 85294 | 13309303 ~ 13312487 (+) | True | LOC103038358 |
| TU293294 | lncRNA | upstream | 95734 | 13301385 ~ 13302047 (+) | True | G216100 |
| TU293237 | lncRNA | upstream | 159928 | 13235914 ~ 13237853 (+) | True | G216073 |
| TU293340 | lncRNA | downstream | 64071 | 13465710 ~ 13471415 (+) | True | G216138 |
| TU293343 | lncRNA | downstream | 71740 | 13473379 ~ 13474113 (+) | True | G216139 |
| TU293345 | lncRNA | downstream | 73497 | 13475136 ~ 13475336 (+) | True | G216141 |
| TU293347 | lncRNA | downstream | 78105 | 13479744 ~ 13480026 (+) | True | G216143 |
| TU293350 | lncRNA | downstream | 78867 | 13480506 ~ 13484360 (+) | True | LOC103033819 |
| XM_022684651.1 | mRNA | upstream | 4744 | 13381873 ~ 13393037 (+) | True | abcb10 |
| XM_022684430.1 | mRNA | upstream | 85338 | 13308037 ~ 13312443 (+) | False | LOC103038358 |
| XM_015605668.2 | mRNA | upstream | 98762 | 13271416 ~ 13299019 (+) | True | frmd6 |
| XM_007248539.3 | mRNA | upstream | 194586 | 13197150 ~ 13203195 (+) | True | tmx1 |
| XM_007248527.3 | mRNA | upstream | 329553 | 13051867 ~ 13068228 (+) | True | atl1 |
| XM_007248552.2 | mRNA | downstream | 1969 | 13403608 ~ 13409451 (+) | False | LOC103032026 |
| XM_007248553.3 | mRNA | downstream | 2166 | 13403805 ~ 13409451 (+) | True | LOC103032026 |
| XM_007248557.3 | mRNA | downstream | 60690 | 13462329 ~ 13464974 (+) | True | pdcd2 |
| XM_022684653.1 | mRNA | downstream | 60690 | 13462329 ~ 13464974 (+) | False | pdcd2 |
| XM_022684431.1 | mRNA | downstream | 77537 | 13479176 ~ 13484371 (+) | False | LOC103033819 |
| trnat-ugu_90 | other | upstream | 50148 | 13347561 ~ 13347633 (+) | True | trnat-ugu_90 |
| trnay-gua_11 | other | upstream | 81619 | 13316075 ~ 13316162 (+) | True | trnay-gua_11 |
| trnay-gua_10 | other | upstream | 82581 | 13315112 ~ 13315200 (+) | True | trnay-gua_10 |
| TU293202 | other | upstream | 293739 | 13091746 ~ 13104042 (+) | True | G216053 |
| TU292989 | other | upstream | 681876 | 12710638 ~ 12715905 (+) | True | G215886 |
| TU294489 | other | downstream | 3602956 | 17004595 ~ 17007537 (+) | True | borcs7 |
| XR_002651919.1 | other | downstream | 3765379 | 17167018 ~ 17175733 (+) | False | LOC111195981 |
| TU294912 | other | downstream | 4910267 | 18311906 ~ 18316824 (+) | False | eif4ebp2 |
| TU294985 | other | downstream | 5341594 | 18743233 ~ 18744231 (+) | False | LOC103030769 |
| TU295009 | other | downstream | 5435723 | 18837362 ~ 18847028 (+) | False | cxcl12 |
