RNA id: XM_007248563.3


Basic Information

Item Value
RNA id XM_007248563.3
length 1775
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC103035225
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13485520 ~ 13494058 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGATGAAGATTCAGCCATTTTGGGTTTGAAGCGAGTAGCCTGTGAGTTCGGGGGAGCAGTTAGCCAACTATAGATACTTTGATACCGGCGGAGGAGAGAGTTTGTTGTTTTTACGCTTCATCTACGCGGACAGAAGCGCTATTTAAGAAGGAGCATTACTGCCACGGTGTCAAATCCACGATGAATCCTGAATAtgACTATTTATTCAAGCTGCTCTTGATCGGTGACTCTGGTGTTGGAAAGTCTTGCCTTCTCCTCCGATTTGCAgATGACACATACACAGAAAGCTACATTAGCACTATTGGTGTGGACTTCAAAATAAGAACTATAGAGTTAGATGGGAAAACCATCAAACTTCAAATCTGGGACACAGCAGGACAAGAGAGATTCCGCACAATCACGTCGAGCTACTACAGAGGAGCACACGGCATTATCGTAGTCTACGATGTTACAGACCAGGAGTCCTTCAATAATGTTAAACAGTGGCTACAGGAAATCGACCGCTATGCCAGTGAAAATGTTAACAAGTTATTGGTGGGAAACAAGTGTGacttaacaacaaaaaaagtggtGGACTACACAACGGCAAAGGAATTTGCTGACTCCCTTGGCATCCCTTTCTTGGAAACTAGCGCTAAGAATGCCACCAATGTGGAACAAGCCTTCATGACTATGGCTGCTGAGATCAAGAAGAGAATGGGTCCTGGAGCAACAGCTGGAGGCACGGAGAAGTCCAACGTGAAGATCCAGAGCACTCCAGTGAAGCCTGCCTCCGGAGGCTGCTGCTGAGGCCACCTCTCGCTTCTTTCCAAAGCCCTGGCCCCCAGAATCACAAGGAACAAGCCCCAATAAAACCAGAGAAAGACAGGTAGACCACTTTCAGAGAGACAAGAGTGAGATTGAGAGACAGGAAACGACTTAAGTTGCCTAAATTGTACTGTATGTAGCCGCACTACCAGAAAACATAGAAGAATCTGCCACCGTTCCGGCCCCTCCTCCTTCACAAGTTAAAGTAAAATGCTAAAAGGTCAGATTTTTGgtaatggtctggggctgctttgaaccacccccctccccacccCCAAAACGAGAGATTTCATTTTCACAcaactgtgtgtctgtgtgcaggTTTCTAAgaaatatatgtgtatttatctcACTGCATTCCTACTGCAGGTCTACTGTGGTCAAAACTCAATGactcttcttttttctgtcctttttatttcttctttctgtgattattttactgtttatattgGCATGTGTAGGTTTTTGTCCCCTTTACAGGTGTTTTGCCAATCTGCGTTTCAACCAACTGCACAAGCGTGGCTGTCCAATGTCAAAAAGTCTAGTGagatatatgtacatatacattatgtatatatatgtaagaTCTGAATTGCCAGTTCTGTAGAATTGAATACATTATTGAAGTAGTTTTACTTTTGAatcttttgcatttaatttgtgGCTGCAGACTATTGTAATTTTGTTGCGCTACATGTAACATTTAACAAacgagtaaaataaatattgtaccACCAGACTGTACAATATCAGATACGTCTGCAATTCTTGGTAGAACTTGTAgagaccatgtatgtgtttttgattatttattcaaCATTCATATGGAAACGTATTGTTCCAGTAATCTAAAAATCAATTTCAAATTAGCCATTACCTGTGGAATATCTTGCAAGTGGAACAACTGCATATAAAACACTATGTTCTCTTTTTCATAATAAAGGCAACTGAATTCTGCTTTGAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293350 lncRNA upstream 1160 13480506 ~ 13484360 (+) True LOC103033819
TU293347 lncRNA upstream 5494 13479744 ~ 13480026 (+) True G216143
TU293345 lncRNA upstream 10184 13475136 ~ 13475336 (+) True G216141
TU293343 lncRNA upstream 11407 13473379 ~ 13474113 (+) True G216139
TU293340 lncRNA upstream 14105 13465710 ~ 13471415 (+) True G216138
TU293360 lncRNA downstream 14804 13508862 ~ 13510402 (+) True G216153
TU293372 lncRNA downstream 37118 13531176 ~ 13531577 (+) True G216165
TU293382 lncRNA downstream 68429 13562487 ~ 13562709 (+) True G216175
TU293519 lncRNA downstream 221945 13716003 ~ 13716515 (+) True G216278
TU293525 lncRNA downstream 245491 13739549 ~ 13739809 (+) True G216284
XM_022684431.1 mRNA upstream 1149 13479176 ~ 13484371 (+) False LOC103033819
XM_007248557.3 mRNA upstream 20546 13462329 ~ 13464974 (+) True pdcd2
XM_022684653.1 mRNA upstream 20546 13462329 ~ 13464974 (+) False pdcd2
XM_007248552.2 mRNA upstream 76069 13403608 ~ 13409451 (+) False LOC103032026
XM_007248553.3 mRNA upstream 76069 13403805 ~ 13409451 (+) True LOC103032026
XM_022684658.1 mRNA downstream 47891 13541949 ~ 13594514 (+) False sertad2
XM_007248566.3 mRNA downstream 47891 13541949 ~ 13594514 (+) False sertad2
XM_007248565.3 mRNA downstream 81754 13575812 ~ 13594514 (+) True sertad2
XM_007248564.3 mRNA downstream 81755 13575813 ~ 13594514 (+) False sertad2
XM_007248567.3 mRNA downstream 114231 13608289 ~ 13613437 (+) True lgalsl
trnat-ugu_90 other upstream 137887 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 169358 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 170320 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 381478 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 769615 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 3510537 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 3672960 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 4817848 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 5249175 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 5343304 18837362 ~ 18847028 (+) False cxcl12

Expression Profile