RNA id: XM_007248564.3


Basic Information

Item Value
RNA id XM_007248564.3
length 4238
RNA type mRNA
GC content 0.45
exon number 2
gene id sertad2
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13541949 ~ 13594514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGCTGAGCCTCCCTCACTCTACGTCACACCTTTCAGAGGGTAGCTGCGGTCTCTGCGCTCCGGCTGCGTCCGTCTCCACTACGGCTGCCTGCTGCGCGTTTCTCCCGCTTTACGCTGCTTTTACGCCTCGGTTCCGCCGCCCCGAGCCTTTTCTCCGGTACCGTCTCTTCCCGGGAGGACTTTCGGACCGAACCGACCCGCTGCTCGGCTTGGAAGTACCGCTGTCGACAATAAAAGCGATCCTTCCCGATGCTTCAGCTCAGAGCTCCGCTCCAACTAACCGTGATATATGTTGGGTAAAGGAGCAAAGCGGAAGCTGGACGAGGATGACGAGGGCGTGGAAAGCAAAGCGCTGGCGGCCGATGGCCTCTCCAAGGTGTCCTACACGCTTCAGAGGCAGACTATCTTCAACATTTCTCTGATGAAGCTGTATAACCAGCGGGCGCTGACTGAGCCCAGCCTGGAGAAGCGCGTGCTCATCAACAACATGCTGCGACGCATCCAAGAAGAGCTGAAGCAGGAGGGCAACCTGCGGCCACTTTTCTTTCCCCCGTCCCCTCCGCCAGACGACCCGGTGGATGAGGGCTTTCGAGAGGCGCAGCCAGCCTTTGGCGCCCTCTCCATGGCCGCAGCCACCCCTTTGATCCTGCCTCCTTCATCACCTGCTCCGCCCCCACCACTGCCCCCGCCTCTGGTCGGTCAAACGCCGCTGGACACCTGCCTCACCCCAGCCTCGCTGCTGGAGGAGGACAGCGCCGCTTTTTGCACATCCCCTCCCTCACCCTTGCCGGATGCACCGTCCAGACTCCATCCACAAGTGGGCGGAGACAGTTTCTCCTCAGCCCTGGATGACATTGAGGAGCTGTGTCCAACAGCCCAAGCATCAGCAGGGCCTACAACTACCTCCCCCTCCGCACTCACAGCGGCCCTACATTCGCCCCTCCAGCCCCCCAGCCAATCCTCAGACTCCAAAGACTGCAGCAAACCTTGCAGCCCAAAGCTGGAGGGTCTAAACCCGCTGCCCCTAGAGCGTCCGTCAGCGACAGCAGCGGCCAATGACTCTAAACTGATGGAGACTCTCCCTCCTACAGGCCTGGACATGAGCACTTCTCCCTCTGCCTCCTCTTCCTCAGGCTTCCTCACTGACCTGGCCCTGGACGATATCCTCTTTGCTGACATCGACACCTCCATGTACGATTTTGACCCCTGCACGTCTGCTGCAGGAGCTGTCCCCTCCAAACTGGCCCCCGTTGTGACGGCCGACGACCTCCTCAAGACTCTGTCCCCTTACAGCGGCTCCGCCCCAGCCGTCAGCTCCAACCAGCCTTTTAAAATGGACCTCACAGAACTGGACCACATCATGGAGGTCCTGGTAGGCTCATGACCAGTTTTGAGAAGGAGATAATGTAGAGGAGAATCAAAAAATTATTCAAAGAATTTTTAGATACAAAGTGTAAAAAACTGAGGACTTAACTGTGGGTGTTTTGtacaggttttatttttttgtttgtttttaagacAAGGCAATTGTAATAATCAATGGTGATGTCACCCAGTACTACTTCTCAAAACACTGTGCATGCACTGTGCTCGCCTTTCCAAAAGATGAACATGAAGGAACACGCTTGGCTTCTTGTCAGATTTGAGTGCCTTCATTGATAAATGACCACTTGGCAAATTCCATGCCCTTTTATTAGTGTCTCTTTTACGTTTCTCCAAATAAGCAGAGAAGGAATAGCAGCTCTCTTTCCCCTTGTCAGCATACAGGTGCAGGAATGTGCTCTGCCGGGCCTATTTGTGTGTTACTTTCATTTTCACCAAGCAcaacaaatttgaaaaaaaggaACTTTATGGTTTTTGGGCTTCTTTAGTGTTATTAGACATTTgggaaatatttaaatattttggtcTGCTCCAACTTTTTAATGCCCAGACTGAACCAAACTTCCACTCTATAATCTCTAATATGAAGTGTACACACTTTACCCTGGCTGGCCTATTTCTACTACACAAACTGTAGGTGTATATGTTGAGCATTGGTGTTGAAATTTTATCTCAACTGAACACAAACCGAACAATCTGCATTGTTAACTTGGCAATTTGGGGTTCAGGCAATAAGTGCACATTGTATTGATGGACATTATGTTGTATAGTTTCGGTCTTGTGAGCCCTTTTCCTGAAGAGGGAATAACCAAGTGAAGGCCCTTTATGCTGTAAGAAATGTATGCAAATGCAAATTTCTTCTAGATCAAAAGTTAACATGACgtcctcgttttttttttatgttggatGATTTTTCGTACTCAAATGCAATTTTGTTGAAAAACACTACACTAGTGTGCAGGGAGTGAGCGTGTGTGAGTGCCtgttcatgcaaaaaaaatgtttctcatGTTATACGCagtctgcatcatttttttacaaactCATTGTCaacatttcttttcatttttaacatcTTTCTTCGCTTGTTTGCCAAACATTTCTCTGTATCCTGCACTGTCCTGCGGTACGGTATACATATTATTGCATGCAGCGTTGCAATACTATTGTACAAAAGCCAGATGTAGGATTTTAGATGGATTGGTTTCATTTGACCTTATTTATATCTTATGTTTGGTTGCGTTTTACTGATTGCCATCTGCTCGTGTCTCCCTTTTGTCTCTCAGCTGGGATTCCTCCTGTTGGGTTTTGGCCAGTAGAGATGGTCAGAAAGATTGGGTAAACAGCACTGGAAATTGAATTTCTTACAGTATATGTACAAGATGTTTCAAAACTACCAAAGAGGATTTTTAGCATTCAGATTTCCAAACTTTTCCATTAGCCTTCCTTATTTCACGGTTCAAAAATAGAAGCCTGTGTGGAGCAGCAAGTAAGATATGCCTTCATTTCTGAAACCCACTACAAAACACTGAACTCGGTGAGACTGAACACCATATTTTCAATTCAGTTTTGACTGTCACGTGCAAAGGGACCATTTCTCATATCAGCAGCTGTTACAGACCCATTTACAAGAGTTCATCAGTAAAGACTCAGTGAGGACTCAGTGTGGGAATTGTTATCAGCATCATTTCCAATCACAGTTAGATTTCAAGACACGTTTGGCTTCATCGCACAGAATCACACATCGTCAGAGAGACAGTAAACTGCAGTGCTGGTCTCATTCAGGTGTGAACATTTCAAATACAGGATTTCACTTTTTACTATTTACAGAACAGCCTTTTGTGGCGTTAGTTTGAACAGGTTACAGCCAGGGGGTGCTAGAGAGATGATCTGAAAGTTGAAAAACACGATAATGAGCGGGACTATGAGAGCAAACGGGCAATACTATTCATTCATAATTATAATTACTGGTTATTTTTAAGATATTTGGATTTGgagtgattgtttttttttgttttaaattatttattctttgtttcctgtgtaaatatatttattttgatgtGAAGCTACCATCTGGATTGTAATATGTACAGAATGTATGGTAGGAATGTAATCTGCTTATAGGAATGTATCTTGCATAATGAATTGGGTTGGAAGccatttgtttctgttttgaaaatgcattattttgttTCCTATATTATAATTTTGGGGTGGGGTTTGTGGCTGTGTCTAGGGCTACATATCCTTACCCctatttaaatgagtatttaATGTCTGTGTATTTCTGTTTGTGTGCAAGGGAAATGTTTGTGAAGcaatattttattctcttcaaaCTTCAGAGGTTCAGACTCCAaagctttttatttcttttctttcttttctttttttattttatttgtttgtcgGGAAAGTCTGTTGCTAACCCTCAATGCCAAAACGTATGAAGAGCAGAAGTGAATGCTTTCTGATGCTGGTTACTGTTAGTTTAACTCAGTGTCTCCTGTCTTCAGCCTGCGCCACAGGCCACCTGTTTTGGGGAATAAAAGTAGTTGAGTGGTTTTGGAGAGAGACCACTGGTGGAGTGGGGGAAGGGGGGGTTACCTCTTCTTCTGCTCAATAAGAAAGgctgtatttttcacagaccTTGGAGCTGTGCCTTTTTCTATGCAATTACCAACATATTCATTTTGAGAAAAAATGAACCCATCAAATGATGATCACTGTATTTGCATCAAGGTGTGGActgtagaatatatataaaaatatggacAGGTGTCTATGAATTTGAAACAGTCTtacttttgtagttttatatcatacaataaactattaaaaatatttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293382 lncRNA upstream 13104 13562487 ~ 13562709 (+) True G216175
TU293372 lncRNA upstream 44236 13531176 ~ 13531577 (+) True G216165
TU293360 lncRNA upstream 65411 13508862 ~ 13510402 (+) True G216153
TU293350 lncRNA upstream 91453 13480506 ~ 13484360 (+) True LOC103033819
TU293347 lncRNA upstream 95787 13479744 ~ 13480026 (+) True G216143
TU293519 lncRNA downstream 121489 13716003 ~ 13716515 (+) True G216278
TU293525 lncRNA downstream 145035 13739549 ~ 13739809 (+) True G216284
TU293526 lncRNA downstream 145999 13740513 ~ 13750306 (+) True spef1
TU293549 lncRNA downstream 172023 13766537 ~ 13769434 (+) True G216303
XR_002651877.1 lncRNA downstream 180592 13775106 ~ 13776806 (+) True LOC111195921
XM_007248563.3 mRNA upstream 81755 13485520 ~ 13494058 (+) True LOC103035225
XM_022684431.1 mRNA upstream 91442 13479176 ~ 13484371 (+) False LOC103033819
XM_007248557.3 mRNA upstream 110839 13462329 ~ 13464974 (+) True pdcd2
XM_022684653.1 mRNA upstream 110839 13462329 ~ 13464974 (+) False pdcd2
XM_007248553.3 mRNA upstream 166362 13403805 ~ 13409451 (+) True LOC103032026
XM_007248567.3 mRNA downstream 13775 13608289 ~ 13613437 (+) True lgalsl
XM_022684659.1 mRNA downstream 37684 13632198 ~ 13636389 (+) True echs1
XM_015605645.2 mRNA downstream 45506 13640020 ~ 13645008 (+) True fuom
XM_007248571.3 mRNA downstream 117659 13712173 ~ 13715354 (+) True LOC103037925
XM_007248573.3 mRNA downstream 130078 13724592 ~ 13738969 (+) True adam8
trnat-ugu_90 other upstream 228180 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 259651 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 260613 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 471771 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 859908 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 3410081 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 3572504 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 4717392 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 5148719 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 5242848 18837362 ~ 18847028 (+) False cxcl12

Expression Profile