RNA id: XM_007249475.3


Basic Information

Item Value
RNA id XM_007249475.3
length 1579
RNA type mRNA
GC content 0.46
exon number 11
gene id nsmce4a
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17140671 ~ 17145888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAACAAACTCCAGAGGGTCTTGAACGCTGCACGAAACCCGGAACGAAACCGACTTCCGTGTTTATTTTACCGCGAAGACACAACTAGCTCAGTGCTTAGAGCTGGATTCTGGAAGCAGCCTCACTTTATAGCTGTTTATTAACTATAATCTTAAAAAGTAGATGGATTTAATGTTAGCGATatgtgtttccagatgtgtttCGTGGTGTCTGAGTCACTAGTGAAGCGCTAGTGTTAACTAGCCGCGCGGGAGCTGCAGAATCTCTGCGGCACCAGTTCAGCTCACTAATAACAGCAGCAGCGGAACCGCTACCGCTCTGTCGGGAGATGTCTGAGTCAAGGCGGAGAGTGAGCAGAGGAAGTCAGGAGGAGTCTGCTGCACATACCAATGGAGTAGGAGGACGCAGCAGGTCCGAGAGAGCAGCAGACACGGGTGATGAGGATGAGGGTGCTGGTCCATCAGGGATCCATGAGGAAGATGATGACCCGGCCCGTCGGAGGGAGATCAGAAGCCAGTACAGGGACCTCATCAACTCTGTCCAGCAAAATCGTGAGGACATGTTGAACCCTGCCAACAATAAGCTGATTGATGTGTTAGAAGAAGCCAACAAACTGTTTGCTAATGTCAGGCAAGCTCGAGAAGCTGCTTTGGATGCTCAGCTGCTGGTTCTTGCCACAGACCTGGGAAGGGAAAAAGCCAGCCAGCTCCATGCAGAGGGATCGTCTTTTGACCCTTCTGCATTTGCAGAGCATTTGttgtcCTTCATGGGTCTTAATCGCttggaagaagaggaggatgatcAAGAAGGCTTAGATGGATATTTGCCTCCAGATGCCTGGCAGAAACTTTCCAAAAGGGCagaacattgttttaaaacagcGCCGTCATTCCATTACTTgttGGGGTCATTTCTGGCTGAACCTCCACCACCACGACAGCGTGTTGAACGACAAAGGAAAGCTCCCAGCAAGGAAGCAAAACGAATGATGCCTACTCAGCTTAAGAAAATGGAAGAATCCCACCAGGAAGCCACAGAGAAAGAGGTGGAAAGGATTCTGGGGTGTCTTCGAAGTTACTACGCTGATGACCccgaGTCCCCCATTTCATATTATGAGTTTGTTGTGGATCCTGCCTCCTTCTCCCGGACAGTAGAGAACATTTTCCACACATCATTTCTTATCAGGGATGGCCTGGCAAGGATCTATCTGGATAGTGAAAAGCTTCCGTGCATAGctCCTGTTGAAGATGGTGAGATAGAGCCTAGTGGAAATGCCACCCGTCACCAGTGTGTCATTTCAATAAGCCCATCCACCTGGAAAGAGATCATTGAGGCCTTTGAAATCAAACAGGCCTTGATACCCACGGTACAGATGTTGACACAAGAAGGCTGATGAGATGAAAACCAAATGTccacaatgttcagttttaataAGTTCACTTTTAAGtaaaggattttatttttgtgaatgTTTGATTTTGATACAGTAAAATGCATGATTGGAATACCTTTATTGTAATATGAGTATGTTGCAATAATGGCattgtaaaataaagtttatataatcttaaaaaaaaa

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294516 lncRNA upstream 80090 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 130873 17009574 ~ 17009798 (+) True G217109
XR_002651981.1 lncRNA upstream 242277 16883041 ~ 16898394 (+) True LOC111196035
TU294461 lncRNA upstream 244920 16883025 ~ 16895751 (+) False LOC111196035
TU294303 lncRNA upstream 421190 16560852 ~ 16719481 (+) False G216941
TU294550 lncRNA downstream 118242 17264130 ~ 17264431 (+) True G217140
TU294658 lncRNA downstream 249151 17395039 ~ 17395249 (+) True G217222
TU294793 lncRNA downstream 630878 17776766 ~ 17777086 (+) True G217313
TU294837 lncRNA downstream 884738 18030626 ~ 18039352 (+) False pax2
TU294853 lncRNA downstream 954066 18099954 ~ 18161772 (+) True G217359
XM_007249469.3 mRNA upstream 10565 17109263 ~ 17130106 (+) True LOC103040130
XM_022684720.1 mRNA upstream 32964 17077039 ~ 17107707 (+) False ldb1
XM_022684719.1 mRNA upstream 32964 17077040 ~ 17107707 (+) True ldb1
XM_022684721.1 mRNA upstream 32964 17077041 ~ 17107707 (+) False ldb1
XM_022684722.1 mRNA upstream 32964 17077041 ~ 17107707 (+) False ldb1
XM_022684740.1 mRNA downstream 3454 17149342 ~ 17184251 (+) True LOC111195981
XM_022684738.1 mRNA downstream 41253 17187141 ~ 17261572 (+) False LOC103040431
XM_022684739.1 mRNA downstream 41259 17187147 ~ 17237633 (+) False LOC103040431
XM_022684737.1 mRNA downstream 41261 17187149 ~ 17261572 (+) True LOC103040431
XM_022684723.1 mRNA downstream 41262 17187150 ~ 17261572 (+) False LOC103040431
TU294489 other upstream 133134 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 3793038 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 3824509 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 3825471 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 4036629 13091746 ~ 13104042 (+) True G216053
XR_002651919.1 other downstream 21130 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 1166018 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1597345 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1691474 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 2021975 19167863 ~ 19203516 (+) False LOC103040131

Expression Profile