RNA id: XM_007249477.3


Basic Information

Item Value
RNA id XM_007249477.3
length 7767
RNA type mRNA
GC content 0.48
exon number 17
gene id unc5b
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17480411 ~ 17575186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGAGGGAGgtgctctgtgattggctgagcggGCAATGGGAGTCCAGAAGCTGGCATTTCAACTGTGTGTTCAAAGCCGCCGTGGTGCTGCTGTTTACAGCCTGACTTTCCGCGGTCCGCAGAAGACAGGACGCGCTCAGAGGAGGATGGCGAGGCGCAgataacagacagacagagactgaCACAGCTGAGGAGGCTTATATACTGCTGCGAGCGCGAGTTTTTAgttttcttgtttcttctgCTGCGGACTCTGCTTGGATACCGtaactaggttaactaactagctGAATATGTTTAACCTGAGCTAcgctttgtgtttgtgtttattaagaCTGTGAAGAAGTTTTGAAGGTGTTGAACTTCTTGTTCTCCTGTGTgtatgagcgtgtgtgtgtgtattttatatgtgAGGAGCTGTCAAGTTCCTACTACAACCTTCTCACTGACTGAACtctgatagacagacagatagattagCTGACTGGCACAGTTTCTCTCCGCGGGACTTCTGCTCGCTAACTCGGGTGTTTCTGCTGGCTCTGCTCGCTGGTGAAAAGTTGGATGAGACTGGCTGGGTTCAGAGCGGCGGAACTCTGCTCTGTTTGCCCGTTTTCTGAGGAGAATATCACGGCTTCAGCAGCAAAGGGTCTGGAAGGGCGATTTCTGACTTCAGCGGCGACTTCGTCGGTCGAGAGCTCCAGGGGCGTTTTGGCAGCAGCGTGACCGAGAAAGATGCTCTCTGTGCGGATACGCCGCGAACAGCCTCCCGCTCCTCTGCTCGCTCTGGTGCTCGTGTGTGGGAGCTTCGTGTACGGCGCAGATGGCAGTGACTACAGCGAGGTTCTACCCGACTCCTTCCCTTCCGCGCCGGCCGAGCCTCTGCCGGAGTTCCAGAGTGAGCCAGAGGACGCCTTCATTGTAAAAAACAGACCAGTGAAACTCTCCTGCAAGGCAGCTCCTGCCACCCAGATTTACTTCAAATGCAACGGCGAGTGGGTCAACCAGAACGACCACGTCACCAGGGAGAGCCTGGACCAGATCACAGGTCTGGTGGTGCGCGAGGTGGACATCTCCGTGTCCAGGACTCAGGTCGAGGAGCTCTTTGGCCTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCCGCGGGCACCACCAAGAGCCGGCGTGCTTATGTCCGCATCGCATACCTGCGGAAGAACTTTGAGCAGGAGCCGCTCGGCAGGGAGGTGCGTCTGGAACAGGAAGTCCTGCTGCAGTGCCGCCCACCAGAGGGCATCCCACCTGCCGAGGTGGAATGGCTGAAGAATGAGGATCTCATTGATCCTACGCAGGACTCCAACTTCCTCATGACGGTCGACCATGACCTCATCATCAAGCAGGCTCGCCTCTCTGACACGGCTAACTATACCTGCGTGGCCCGAAACGTGGTTGCCAAGCGACGCAGCAGCACTGCCACACTCATTGTCTACGTGAGTGGTGGCTGGTCATCCTGGACAGAGTGGTCAGAGTGCAATGCTCGTTGTGGCCGTGGCTGGCAGCGCCGGACGCGTAGCTGCACCAATCCTGCACCGCTTAACGGAGGCGCTTTTTGCGAGGGTCCGCCCTTTCAAAGAGTCACCTGTACCACCCTCTGTCCAGTGGACGGAGGCTGGACAGAGTGGGCCAAGTGGTCCGCATGTGGCACCGAGTGCACACACTGGAGAAGCCGTGAGTGCCAGGCCCCCCCACCACGTAACGGAGGACGCCACTGTATCGGCAGCATAATGGAGAGCAAGAACTGCACAGAGGGACTGTGTGCCCGCAATAAAAAGATTTCTATTGAACATACGACTCATCCGCTGGACTCCGGTGCAGGAGTGGCGGTGTACGCAGGCCTAGTGGGGGCCCTGTTGCTGTGTGTGATCCTCGTGCTGTGTGTGGGTATCCTGGCCTACCGCCGCAGCTGCAGCCATCTTCACGGTGACATCACCGACTCCTCATCCGCCCTAACCGCAGCCTTCCACCCCGGCAACTACAAACCCCCAAGACAGGATAACCCTCATCTGCTGCATCCCTCAGCTCCCCCCGACCTGACGGCCAGCGCCGGGACCTTCCGCGGGCCGCTTTTCTCCTCTCTGCAGCAGAGCACCTTGGACTCCCACCACAAAATCCCCATGACCAACTCTCCCCTGCTGGACCCTCTGCCTGGCTTGAAGATAAAGGTGTACGACTCCTCCACCATGTCCTCCGTGGAGCTGCCCGCTGGCCCGGGCTCCAGCGATGGAGAAATCATGAGCTTAAAAACAGTGGGCAGCGGGACCCGAGATCACTACGGACACACTCTCCCCGGAGAGCCGGGACACAGTGCCAGCGCCACACTGGGCTGCCTGGGAGGACGCCTTGCAATCCCAAACACAGGTGTGAGCTTATTGGTTCCTCCAGGAACCATTCCTCAGGGGAAGTTCTACGAGATGTATCTCATCATCAACAAATGGGAGAAGACGACATTGCCGTCTGAGGGCGGTCAGACAGTGCTGAGTCCAGTGGTGAGCTGTGGGCCTTCAGGAATGCTGCTGAGCCGCCCAGTCATCCTCACCCTGCCCCACTGCGCCCAGCTGGAGCCCCCCGACTGGAGCCTTACCCTGAAGACGCAGACTAACCAAGCCTGGGAGGAGGTATTGACGGTGGGGGAGGAGAGTCTGTCATCTCCGTGTTACCTGCAGGTGGAAGAGCAGAACTGCCACGTACTGATGGAGCAGTTAGGCACCTATGGGCTGGTGGGTCAGTCAGTTCCACCTCAGCCTGCCTGTAAGAGGCTGCAGCTGGCTCTGTTTGCCCCTCGAGCCCCCTGCCTCTCTCTGGACTACAGTCTGAGAGTCTACTGTATACATGACACTCCTCATGCACTAAAGgAAGTGTTAGAGTTGGAGCGGAGTCTTGGTGGGGTGTTGCTGGAGGACCCTAAGCCCCTCCTCTTTAAAGACAGTTACCACAACTTACGGCTGTCAATCCATGACATCCCACACTCACACTGGAGGAGCAAACTTCTTGCCAAGTATCAGGAAATTCCATTCTACCATATCTGGAGTGGAAGCCAGCGGCCCCTGCACTGCACCTTCAGCCTGGAGAGAGGCAGCCTGGCAGTGTCCCAGCTCAGCTGCAAAATCTGTGTCAGACAGGTGGAGGGAGAGGGTCAGATATTCCAGCTGCACACTGACATTCAGGAGACATTACCCCCCCATTCGCCGCTGCCTGCAGGAGGAACGTGTCTGCCCTCCTCTCAGGTGGGCCCTTATGCCTTCCGCCTGCCAGCCTCCATCCGCCAAAAGATATGTGCCAGCCTGGATGCCCCCAGTGCCCGCGGCTGTGACTGGAGACTGCTTGCACACAGCTTGGGCTTTGACAGGTACCTGAACTACTTTGCGACGAAACCCAGCCCCACAGGTGTGCTGCTGGACCTGTGGGAAGCCTGTCACCAGGGTGACGCAGACCTGGTCTCCCTGGCGACCGCTCTTGAAGAGATGGGCAAGAGTGAGGTCTTAGTTGTCATGACGACAGATGGGGATTGCTGATTGGGTAATCAGAAAGCATGAGAAGGAGAGAAATTCGTCAGCGTGAAGAAAAGCAAGCATTAATGCCATGCCAGTGGATGGATGGGCAGGAGGAGCCTACAAGAATCCAGTGCACAACCACTGTTCCCCCAACcactacaacactacacactacaatgACTTGCCTATAATTACTCAaccccagtgtgtgtgtgtgtgtgtgtgtgtgtgtggacagaaCCCCAGTGGATACCGACGACACCGTGCCAGAGCACATGAGGCTGGCTGCCACTGGCTGAATGATTCCCCAGTCACTCCTAATCTCTCCCAGTCTAACTTACACACTCTGCTGTGCTCAGCTGTAGCAAATGGAGTCACTCCATTGGCCACCAGTGGTAAACCAGTGGTGGAATCTGTGGTGTTATTGGGAGATGAttgagaagatttttttttgttcattcatttctttcattcattcaattCTGATGCCTGCAGAAAGCATAGATATGAGCGTACATATGATCATCACAAGGAAGCTCTCCCATCCACCCACTCCTAATTTTCCaggaataatattttttcttaagaCCCCACCCCCCCATTTTCACACTCACTCAATCCCttactccctccctcactcactcaatcactcactcCCTTACTCTCAGATAGATGTAGGTACTGGaaatgcagtgtgaaagcgcatGATTAAATATCACCCAAGCTTTGTTTGCTATCTAGTGGATATCACTGGATGCTTTAAAACCCTTTTCGAATGGGATTAATTTTACATAGGGAAGTGGGGTAAAGTTCTTAAACTACAGTACCTTACTACAGAAATTGTACAAATTATTCACACATGACAAGAATTCTCACTTTTGTTGACCGAGGTGGGAGTAGCTACTCGATTTATGCACTGCCATTACCTTTAAAACAATGTCATGATATGCAATCATGCAACTATtacttattataataattttatttgaaaattatcaGCAATTAGCATGTTTATAACACATACAGCAAGTAGGTTATAAGCTACTCTACACAATAATTTGCACAATAAAGTTTTCAGAAGCTTCACGCTTGAGATTTATACGTCTGGCATGGCCCGAGGTATCCACGCCAATTTACTACGATACCAAATACCCTCAAGCTCCTcttaaaaagctgtaaaaaatcCTTTTCCACAGTATTTGATGGAAAATTTACTCACACATTTTAATTCACACTGGAATAATATAACCTGAGGTTATTTAAATGGATCTTATTATAGAAGATAAAAGGCGCAGGAATTTTTACTGGCGTGGGAGTGCACAATACGAGAAAAAATACAGATATAGTGTATTTGCACAGAGCTTAAATTATTGATGATGTCCAGTAATAATTACTTTACCCCACCTCTCCAGGTAAAACTAATTCTAGCAAGCCTCACATGCAAAGAATATGTCCTTACAGTTACAGTTGCCAGTACACAGAATACTATGTTAAACTAAGCCAAACTACTCATCAAAGCAATACAAAAACCGAGGCCTGCAACAGATCCTGTCTGGGTTTTTCCGTCACTTTCCTTTACAGCCTCCTGAGCACCGCCAGCAGTGAACCTGACAGTACCCTCTGTACGTCTGTTTGCTATAATCCTTGGCATGTTTGCAGAATCCTTGGATTAGCGTCTGACAGAAGCGTCTCTGCGAGTGGACCACATTGTATTTACTGGATTTCTCATTTCCTCCTTCGACCTTCTTCTTCTATGAACCATAGTATCTTGGTTGCTCTTAATTACATCTTCTCTTCAGTCCATCTTATATAATGCAGAAGAGCTTTCCCACAAAAAGTTTCCTATAGGGAACgcacttttttaagttattgtCCATATTAGTGGATCGCtgtttcttttactctctcctcGTCTGTCTCTGTTACCTGCTGTTATGTTCATGACTGTTCATAAAAATagactctctttttttttatctgtgttctgctgctctgctgtcATGTTAAGTTTCTATTGGCAGGCAGATCTGATTAGCAGGGCGTGGCTGTAATGTGCTTGAAGAATTTCTAtggagcttaaaaaaaaacaaaagcattacatttacatggtgtttcatatattcatatatattgttTCTGTATATTTCACCCAGTTTTTTCTTTTGGATGGGTAATTACCCAATTCCTGTTTACTAGCAATGCTCCCAACACTGGGAGCCTGAGTCTGCTGAACCATTCAGAGCAcagtgtttaatacattttaaaaacttaaattctacgttttttttgtttaaaattttgctGTCGGAATAAACAGTTTGCAGTAATTTATCATTTtggattaataaaaataaattatatacataaatgTAAATCTAAATCGTAATGAAAAAGAGATGTTACCCTCGCATTCACCTTTTTCACTTTATAGACCAGAATTGTTGTTTCAGactccagtggtctaaagtgctgccactatgatcgggagatcgctggatcgaatcccggtcatgttgcttgccatcagctgctggaccCCCGAGAGAACACCATTGGCCTTTCcctctctgggtgtgtagatggcgctctctccccacatcactccaaagggtgatgttgatcagtatgaggcgtctgtgagctgttgtattgaaactgagtcgctgcactttcctccaagcgcgctgtgatgctactcgggtTGTGTTGGGAAATTGGTGTGTAAATTGTGGCgaaaagaggataaaaaaaattattgtttcAAAAATCATTTTGAATTGCTATTTACAACATTTCTAACTGATGAATTacacaattaaatatttcaaatgtattaaaagccACGTGAGAATTACTATACAAAATTTAGATTTAAAACCGTGAGTCACCTTTTAAGCTCCATAGAGTTCATCATTGGTTGttgttaattatttttgaaATGCTGTAGAATACTTCATGAGAGAAATAGTCCTTTTCAGCCATTCAAGCAGATGTGAACAGGTGAACGAATGCAGCTGCTTTCTTTCAATCCTCTGAAGGAAGCTACCCACTGGAACTATTGTAACTCAGCCGGTGGCATTAATCACTGTTCAGATTCTGACGTCGGTCAGATGCGGGTCTTCTGTACGGTCGTTAAATGTAGCCTTCTGAAACTGGCATGACTGCTCATTTGAGTGCAGTTTGTCGCATTCATTGCCTGCTCTGACTGTGGGTTAGTAATGTTACTATGGTGTGAAATAACAGCCATGGCTGGCATGGGCATTTTATCATCACTTGTTGTCCATGCTGTCCTTTTTTTGGAGCAgatttcctttcatttttttgtttttataacccTTTCTCTGTAAAAGTGTTCAGATATCCAGaagaaaaatacaagcagtatccatccatctctctttctctttctgaaaGAGAGAttctggctgtgtgtgtgtgtgtgtgtgtgtgtgtatacggtGTGTGTGCTATTGAGTGTGTGCTGGCTCAAAGGGCCTCATCATTTTGTAgctatttcttttttatgtctttgtaAGTTCTATGCAAGTACAAAACGCAAGTGAATTTGCAGACCTCTGTAAGTTTTCTCTttgatgtgtgagtgtgaggctGGGAATTATGTTCTTGTTGTACTACTGGCATATGCTGTAGCAGGGCTTAGGGGCTAAAAGGTTCTCAGAGGCCCCTCGGCAGCAACAAACAATCCAAAATGACTCCTGGGAGAGGGCTTATACGACGGGGTTCCGCGTGCACTCTGCCTCGCCTGAGCTATGTGGAGGCATGTCATCATCAATAAGAGAAGGCCACATAAACATACTTTATGAGGAGGGTTAAATTAGCCCTTCCACATAAGACCAATGGCTGGCAATCGAGATGATGAAGACTGTAACGGAAGCTCAAGAGCACACGCGGCCTTTCGGCTCTGGCTGCACCGCTGAGCTCCAGCCGTTCCCACAAACACCTGCTGGTGGTCATTCAGGTATGAGACATCAGCATCAGCTGGATTCTCTTCAGGGGTCTTCAGACTGGGATCTGCTTCGTTCTGGATGTTGCTTGCTATTTACTGGAGAACTCGAGGACGAAATGAACCCTGTTTTGTTCAAATTGTAATTCTTTAAGAGGGTAAACCAGAACTCTTTTTAAAGCTCTATTGTACATAAATGTTTAGCCTTCTTACTGTaactaaatataatttttatgcaataaattatatttcctagtttaacaaaa

Function

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294658 lncRNA upstream 85162 17395039 ~ 17395249 (+) True G217222
TU294550 lncRNA upstream 215980 17264130 ~ 17264431 (+) True G217140
TU294516 lncRNA upstream 419830 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 470613 17009574 ~ 17009798 (+) True G217109
XR_002651981.1 lncRNA upstream 582017 16883041 ~ 16898394 (+) True LOC111196035
TU294793 lncRNA downstream 201580 17776766 ~ 17777086 (+) True G217313
TU294837 lncRNA downstream 455440 18030626 ~ 18039352 (+) False pax2
TU294853 lncRNA downstream 524768 18099954 ~ 18161772 (+) True G217359
TU294858 lncRNA downstream 542016 18117202 ~ 18124261 (+) True G217362
TU294867 lncRNA downstream 577015 18152201 ~ 18154348 (+) True G217368
XM_022684738.1 mRNA upstream 218839 17187141 ~ 17261572 (+) False LOC103040431
XM_022684737.1 mRNA upstream 218839 17187149 ~ 17261572 (+) True LOC103040431
XM_022684723.1 mRNA upstream 218839 17187150 ~ 17261572 (+) False LOC103040431
XM_022684725.1 mRNA upstream 218839 17187150 ~ 17261572 (+) False LOC103040431
XM_022684726.1 mRNA upstream 218839 17187150 ~ 17261572 (+) False LOC103040431
XM_007249480.3 mRNA downstream 4012 17579198 ~ 17632034 (+) True LOC103043107
XM_022684746.1 mRNA downstream 4012 17579198 ~ 17632034 (+) False LOC103043107
XM_022684745.1 mRNA downstream 4012 17579198 ~ 17632034 (+) False LOC103043107
XM_022684747.1 mRNA downstream 4012 17579198 ~ 17632034 (+) False LOC103043107
XM_022684748.1 mRNA downstream 58590 17633776 ~ 17672861 (+) False parg
XR_002651919.1 other upstream 304678 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 472874 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 4132778 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 4164249 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 4165211 13315112 ~ 13315200 (+) True trnay-gua_10
TU294912 other downstream 736720 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1168047 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1262176 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 1592677 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 1767808 19342994 ~ 19345401 (+) False rrp12

Expression Profile