RNA id: XM_022684747.1


Basic Information

Item Value
RNA id XM_022684747.1
length 6756
RNA type mRNA
GC content 0.48
exon number 54
gene id LOC103043107
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17579198 ~ 17632034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGGATACTAGCTTTATCCTTCTCTCATTTATTCTGCACTTCCCCACCACTTCACCACACCTCTCCTCCACTCCTTCCTATCTTCCTAATCTTCCACCACCAGCCTCCTGTAGGCTGGTCCTACTGCAGCCCATGAAGAGGAACTTAACTTACATATTTTTCTGAGAATTCACTCTCAACTTCTCTCCCAACATGCTGAAGGTGGTCGTTGAGAGTGCTAAAGGGATTCCTAAAAAGACCCTCGGTAATCCTGACCCAATAGCAGGAGTCgttttcagaggtgaaaaaaagaaaacaaaggcCATTTCCAATGAGTTGAATCCAGTATGGAATGAGGTTTTGGAGTTTGATTTGAAGGGTTCTGCTTTGGACTCGTCTTCATTTGTGGAAGTGGTTGTTAAGGATTATGAGACCATCGGCAAGGACAAACCTATTGGCTCTGTGAAAGTCTTTCTCCGGGAGCTGGCCAGCGGTCAGACCAGGTCCTTGCCTTCAAGGAATATTCCACTCATCAATGAGAAGAAGCAAGATATAGGGgCAACAATCAATTTAGTAATTGGATATGAACCTCCTGCCAGTGCCCTTCCTAACCCGAATGTACAAGTTGATGCTGAAGTTGCTACTGGAGAATCAGGTGTGTCCTCTGCTGGAAAGGATGGAACTGATGCTGATGAAGACACTGGAGACTGGGGAGATCAAAGAACTCCTGGAGAGCCTGCCACACCCGGACAGCCTGGAAAACCTCCCCAAAAGATGATCCGCACAGGTCGAAAGAGGCAGAAAGCTCTTGCTAACAAACCCCAAGATTTCCAGATTCGCATACGAATCATCGAGGGTCGGCAGTTGGCCGGCAATAACATTAAACCGGTCGTCAAAGTGAATGTGTGTGGACAGACACACAGGACAAGAATAAGAAGAGGCAACAACCCATTCTTCGATGAGATTTTCTTCTACAATGTCAACATGCTGCCCTCTGAACTTTTTGATGAGAACATCTACATCCAGGTTTTTAACTCATTCTCCTTGAGGTCAGACAGTCTTTTGGGGGAGTTTAAGCTTGATGTGGGTTACGTCTATGATGAGCCTGCTCATAGCATTATGAGGAGATGGCTACTGCTGAGTGACACAGACGACTCTAGCTCTGGAGCACGAGGTTACCTGAAAGCCAGCATGATCATTTTGGGAACTGGAGATGACCCACCGGTGGAAAAGAGGGAAGAGAGTGAAGAACAGGATGACATTGAGAGCAACCTTCTGCTACCCGCTGGGGTCACCCTGCGATCAGCCACACTCGCTCTCAAAGTGTACCGAGCAGAGGACATGCCGCAGATGGATGATGCCTTCGCCCAGTCAGTCAAGAACATGTTTGGAGGAGAGGGTGACAAGAAAAACCTTGTGGACCCTTTTTTGGAAGTTGGCTTTGCTggcaaaaagctatgcACAAAGATCATTGAGAAGAATGCAAACCCAGAGTGGAACCAGTTGGTAAACGTGCAGGTCAAGttTCCATCAATGTGTGAGCGCATCAAACTTACTATGTTTGACTGGGATCGCTTCTCAAGCAATGACGCTATTGGAACCACCTATTTAAATCTGACCAAAATAGCATCCTCGGGTGGAGAATTTGAAGAGTCACTTACTGAAAATGTAATGGTCCCAGCTGATGatgACAGTGTTGGGAATGAGGTTGGCTTTCTCCCAGCTTTTGGCCCTTGTTATCTGAACCTGTATGGAAGTCTGAGGGAGTTCTCTGATCTTCCTGATCCGTATGAAGAGCTTAATTTTGGAAAGGGTGAGGGGGTGGCCTACAGAGGGAGGGTTCTCATTGAACTTTCCACACGGCTGGATGACAAAGTAGACAAGAAAGTGGATGACATCTCCAATGACGACATCTTGGTAGCACAGAAATACCAGCGGAAGAGGAAGTACTCGCTGTGTGCCGTGTTCCACAGTGCCTGCATGCTTCAGGAGCCTGGAGAACCAATCCAGTTTGAGGTCAGCATTGGCAACTATGGCAACAAGATGGATTCGACATGCAAACCGCTGGCCTCCACCACTCAGTACAGCTGTGCTGTGTTTGATGGAAATCACTACTATTACTTGCCCTGGGCTGACACGAAGCCAGTGGTTATCCTCACTTCCTTCTGGGAAGACATAAGTCATCGTTTAGATTCAGTCAACATTATTCTTTTCATTGCTGACAGGCTGCAATCCAGCTTGACCTCACTGAAGACGGCCATGCTGGCAAAAGTTCCTGAAACACGTTTAGCTGAAATCTGGCTAAAACTCATCAACCAGCTCATTGAAGATCTCACTAAtttccCATTACCAGAACTGGACACCAAGGCGAACTTGACAGCTTTGGATATTCAGCTCAAGAAGTTACGAGACAGTGCCATCGCTGGGATCCGGGAAGCAGCTCGCCGCATGAGAGAAGAGGCCACTGATGTTAAAGCCACGCTGCCTGACATTGAGGAGTGGCTAGAGCGCCTACAGCAGATCGCAGATGAGCCTCAGAACAGCATGCCTGACATCATCATTTGGATGCTGAGAGGAGAGAAACGCATGGCCTACGCCCGCattccagccaatcaggtgcTCTTCTCCACCCTCAGTGAGCAGGCTACTGGAAAGTACTGTGGCAAGAAACAGACCATCTTTATGCAGTACCCGATGGATAAAAACAAAGGGGTGAAGATTCCTGTGCAGCTGCGTTTGAATGTTTGGCTGGGCCTGTCAGCTCACGAGAAGAAGTTCAACAGCTTTGCAGAGGGAATGTTCAGTGTCTTCGCTGAAATGTATGAAAACCAGGCTCAGGTTTTTGGGAAGTGGGGCACCACAGGTCTGGTGGGCCGCCACAAGTTCTCCGATGTGACTGGGAAGATAAAGCTGAAGCAGGAGTGCTTTCTGCCCCCGCGTGGATGGGAGTGGGAGGGTGAATGGTTCATCGACCCCGAGCGCTGTCTGCTGACAGAGGCCGATGCAGGGCACACAGAGTTTACAGATGAAGTTTACGAGAACCAGAGCCGTTTCCCTGGTGGAGAGTGGAAGCCAGCAGCCGAGCCCTACACTGATGTGAATGGAGAGAAGGCCCAGAGTCCAAATGAGGTTGAGTGTCCTCCAGGATGGAAGTGGGAAGACGAATGGAGCTTCGACAGCAACAGAGCTGTGGATGAAAAAGGTTGGGAGTATGGCATCACCGTTCCTCCAAGTGATAAGCCCAGCTCCTGGGTAGCAGCAGAAAAGATGTATCACATCCATCGCAGAAAGAGAATGGTGCGGCCACGCAAGAAGATAGCAAACGCCCCCACCATAGAGAAGAAAGAATCAGGTGATGGCTGGGAATATtcctctctgattggctggaagTTTCACAGGAAGGAACGTTCCTCAGATACATTCCGGCGCAGACGCAAGAGAAGGAAGATGGCGCCGGCTGACAGTGTGGGCGCTTCAGCCATCTTTAAATTGGAGGGTGCCCTGGGGGTAGACATTGATGAGAAAACCAGCAAGAAAGATGCAGCCAAGCTTTTTGGTGCCAACACGCCCACTGTTTCCTGCATTTTCAACAGGTCATACTTGTACCATCTCAGAGTCTATGTCTACCAAGCTAGGAACCTTCTTCCCATGGACAAAGACAGCTTTTCAGATCCCTACTGCCATGTGTCTTTCCTCCACGTGAGCAAGACCACAGAGATCATTAAGGCCAACCTCAACCCCACATGGGACCAGACACTCATCTTTAACAACATTGAAATCTATGGAGACCCACAGACCATCGCTCTTAATCCACCCAGTGTTGTCATGGAGATTTTCGACAGTGACCAAGTGGGGAAGGATGAGGCCATGGGCAGGTGTGTCTGTCCCCCAGTGGTCAAGCTGAACCCAAGCTCACCGGTGTCCCCAAAGCTGCTCTGGTTTCCTGTGTTAATGAAAGGCAGAAGCGGTGGAGAAATGCTGGTGGCAGCTGAGCTCATTCTGAAAGATAAAACAAATGAGTCTGAGATGCCCCTTGTTCCACCCAGACGAGGTGAGAAGCTGTACATGGTGCCTCAGGGGATCCGGCCTGTGGTGCAGCTTACTGCCATTGAGATCCTGGCTTGGGGTTTGAGGAACATGAAGACGTACCAGATGGCTGCTATATCCTCCCCCAGTCTGGTTGTggaatgtggaggacaaactgTTCAGACAGGTGTCATCAAAAACATCAAGAAAAACCCAAACTTTCCAGGATCAGTTCTCTTCCTCAAAGTGcTTCTCCCTAAAGAAGAGATGTACACTCCACCTATTGTTCTGAAAGTAATAGACCACAGGCCGTTTGGTCGGAAACCCATTGTTGGCCAATGCACTATAGAATCTCTGGAGGAGTTCAGGTGTGATCCCTACACAGACACTGCTGAAGTGTCCAGGACTGCCAGAGTGGCCATGATGGCAGCAGCCCCTGGAGATGTAATTATTGACATGGAAGACAGAAGACAAATTCTAGATGGCCAGAATTCGGAAAAGATGGAGGAGGCTGTGGACTGGTGGAGTAAACTCTTTGCATCTATTGGAGAGAACGAGAAATGTGGCCCGTATCTCCAGAAGGGATATTCCACTTTAACAGTCTACCAGCAGGAGCTTGAGGCAGTGACAGGTTTCCATGGGCTCACAGACTTCTGTAACACATTTAAACTGCACAGAGGAAAGACTGATGATGACGAAGAGGACCCCTCTGTAGTGGGAGAGTTTAAGGGATCATTCAGAATTTACCCCTTGTCGGATGACCCAGAAATCCTCCCCCCTCCACGGCAGTTCCGGGAGCTACCTGAGAGTGGACCTCAGGAATGCCTGGTTAGAATCTATGTGGTGCGCTGCATTGATCTACAGCCCAAAGACAGCAATGGAATGtgtgatCCCTACATCAAGATTAGTCTGGGGAAGAAAGTCATTGATGACAGGGATAACTATAAACCCAACACACTAAACCCAGAGTTTGGAAGAACGTTCGAAATGTCCTGCTTTCTGCCACAAGACAAAGATCTGAAAATCAGTGTCTATGATTTTGACTTGTTAAGCCGTGATGACAAGGTTGGAGACACAGTCATTGACCTTGAGAATCGCCTCCTCTCTCGATTTGGCTCGCACTGTGGCCTTTCACAGACatactgtgtTTCAGGAGTGAACCAGTGGAGAGACCAGCTGAAGCCGTCTCAGATACTTCAGAACCTCGCCAGACTGAGAGGAGTCCCTCCTCCACAGATTGCAGATGATGGCAGTTGGCTTTCCTTTGCTGGACGGGAATATAATCTGCAGGATTTGGAGGCCGGCAAAGTACTGCACCAGCACCTGGGTCCAGCTAAGGAACGTATCTGCCTGCATGTTCTGCGGAAGCAGGGCCTGGTGCCTGAGCATGTGGAAACCAGAACCCTGCACAGCTCCTACCAGCCCACACTATCTCAGGGAAGAATTCAAATGTGGGTGGACGTGTTCCCTAAAAGTCTTGGCATGCCCGGACCTCCAGTGGACATCACTCCTCGTAAAGCCAAAAAGTTTTTCCTGAGGGTAGTCATTTGGAACACCACTGATGTCATCCTGGATGAAACCAGCATTACTGGTGAACGCATGAGTGATATCTATGTGAAGGGGTGGATGCCAGGTATGGAGGAGGACAAGCAAAAAACAGATGTCCACTACAGGTCCCTCGACGGAGATGGAAACTTCAACTGGAGATACGTCTTTGGATTTGACTACCTGCCTGCAGAGCAGCTGTGCCTTGTGTCAAGAAAGGAGCACTTTTGGAGTCTTGACAAAACTGAGTTCAGGATTCCTCCCAAACTCATCATACAGATTTGGGACAATGACAAATTCTCATTGGATGACTATTTAGGCACAGTAGAGCTGGATTTGATTCACCTCCTCCCTCCATCCAAAACCCCTGAAAAGTGCAGCCTTAACATGCTAACACAAGGACCAAGCAAGAACCTGCCCTTCAAATCACTCTTCGCTCAGAAGTCTGTGAGAGGCTGGTGGCCCTGTGCCATGGAAGAGGACGGAAAAAAAGTTCTGACTGGTAAAGTCGAGATGACTTTGGAGATTGTGGAAGAGAAGGAGGTGGAAGAAAGGCCAGCTGGGAAAGGAAGAGACGAGCCCAACATGAACCCCAGACTGGAGCATCCAAACCGCCCGGATACATCATTCCTGTGGTTCACAAATCCATGCAAAACTATGAAATTCATTGTGTGGCGCCGATTTAAATGGGTCTTCATTGGAGGCATCATTCTCATTCTAGTGCTCCTGTTCATAGGAATCCTGCTGTACTCTTTACCTaactacATTTCAATGAAAATTGTGAAGCCATTCTAAAAGGAGATCAAAGGGCTGTCACTGGAGTACATTGACAAAGAATGATGGGATTACCAAAATGTATCATCATTTTTATACATTGttctatattaaaattatttttacaatgtTCACAAATGCAGTTCAATGACCGCAGGTTTGCACTTTCTCTCGAATTTCATACAGTATAATTGACAGCATACAGAGCATAGCAAGATATTTATCACAACAGAACTTTTTGATTCAGTGTTGTAATCAAGTCAATTTATCAGATCCACTCACTCTCCTACAATAGTAATTTACAGGAGAACATTCAGATTCAAcatattgtactgtatatatgatcATTTTCCACTGTATTGTGTAGACATACCTGCCTAAGCCTTGTCAAaggaaataaatgttgaaataacaacacaaatacaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294658 lncRNA upstream 183949 17395039 ~ 17395249 (+) True G217222
TU294550 lncRNA upstream 314767 17264130 ~ 17264431 (+) True G217140
TU294516 lncRNA upstream 518617 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 569400 17009574 ~ 17009798 (+) True G217109
XR_002651981.1 lncRNA upstream 680804 16883041 ~ 16898394 (+) True LOC111196035
TU294793 lncRNA downstream 144732 17776766 ~ 17777086 (+) True G217313
TU294837 lncRNA downstream 398592 18030626 ~ 18039352 (+) False pax2
TU294853 lncRNA downstream 467920 18099954 ~ 18161772 (+) True G217359
TU294858 lncRNA downstream 485168 18117202 ~ 18124261 (+) True G217362
TU294867 lncRNA downstream 520167 18152201 ~ 18154348 (+) True G217368
XM_007249477.3 mRNA upstream 4012 17480411 ~ 17575186 (+) True unc5b
XM_007249478.3 mRNA upstream 4012 17480411 ~ 17575186 (+) False unc5b
XM_007249479.3 mRNA upstream 4012 17480411 ~ 17575186 (+) False unc5b
XM_022684744.1 mRNA upstream 4012 17480411 ~ 17575186 (+) False unc5b
XM_022684729.1 mRNA upstream 317626 17187150 ~ 17261572 (+) False LOC103040431
XM_022684748.1 mRNA downstream 1742 17633776 ~ 17672861 (+) False parg
XM_007249481.3 mRNA downstream 1742 17633776 ~ 17672857 (+) True parg
XM_007249482.3 mRNA downstream 45120 17677154 ~ 17700496 (+) True LOC103043721
XM_015605858.2 mRNA downstream 45374 17677408 ~ 17700496 (+) False LOC103043721
XM_015605854.2 mRNA downstream 123934 17755968 ~ 17760796 (+) True LOC103045248
XR_002651919.1 other upstream 403465 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 571661 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 4231565 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 4263036 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 4263998 13315112 ~ 13315200 (+) True trnay-gua_10
TU294912 other downstream 679872 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1111199 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1205328 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 1535829 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 1710960 19342994 ~ 19345401 (+) False rrp12

Expression Profile