RNA id: XM_015605858.2


Basic Information

Item Value
RNA id XM_015605858.2
length 3691
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC103043721
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17677154 ~ 17700496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATAGAGAGAGTGACCTCCTGAATACCCGCCTGCGGCTGCGGTCTGCTGCTGCGGCTGTAGccgagctgctggtgctgctgttacACCAGCAGGTAAACAGGCGACACGGGCAGATGCGGAGCCGAGCAACCGTTACCCGCAGATATATCAACACAACACGGCTGCGTTCAGATCAGCACAGaCTAAGCAGATATGAGTCAGTTTCGGCCACTTGCCGGTGTCCTGCGGGGCAGTGGCCTGTGGATGTTGGGTCGTACTGGGCCAGGAAGACAAGTGTTTAACCCTCATCGAGGCTGTTCCTCTAGAGCTACTCAGCCATCCCCTTCAGCCCTCAGTTCCAGCTATGTGGAGGAAATGTATTATTCCTGGCTTGAAGACCCCAAAAATGTTCATGAGTCTTGGGATGCATACTTTCGCAATGCCCAGGCAAGCAgtccagcagcagaagcagaagagaGGCGTCCGTCCACTCTCCTCCAGGGTCGAGCCCTGTCTCAGACTCCAGCAATGTCCCAAAAGGTGGTGGAAGATCACCTGGCTGTCCACAACCTTATCAGAGCCTACCAGATCCGGGGTCATCATGTGGCCCAGCTGGACCCCCTTGGCATCCTTACAGCTGACGTTGATTCTTTTGTCCCTTCGGATTTGATAACAACCATTGACAAGCTTGGGTTCTATGGCCTGGATGAATCTGATTTGGACAAGACCTTTCAGTTGCCATCAACAACATTTATTGGTGGGCAACAAACCACACTTCCTCTCAGGGAAATCATTCGTAGACTTGAGACTTCATACTGTGGTCATATTGGTGTggagttcatgttcataaacaACGTAGAGCAGTGTCAGTGGATCAGGCAAAAGTTTGAAAGTCCAGGCATCATGAAAttcactgaaaaagagaagaggacACTGCTGGCCAGGCTGGTGCGTTCAACACGGTTTGAGGATTTCCTGGCCCGTAAATGGTCTTCAGAGAAGCGCTTTGGCCTTGAAGGCTGTGAAGTTCTAATTCCTGCCTTGAAGATGATCATTGACAAGTCTAGTGCAGCCGGTATAGAGAGCGTGATCATGGGCATGCCTCACAGAGGTCGGCTGAACGTGCTGGCTAATGTTGTTCGGAAAGATCTGGATCAGATTTTCTGCCAGTTTGATCCCAAACTTGAAGCTGCAGATGAGGGCTCAGGAGATGTGAAGTATCACTTGGGTATGTATCACGAGCGGATCAACCGGGAGACGGATAAGGACATCACCCTGTCTCTCATGGCTAACCCCTCCCACCTTGAGGCAGTGGACCCTGTAGTGCAGGGCAAAACCAAAGCAGAGCAGTTCTACAGAGGAGACACAGAGGGGAAGAAGGTGATGTCGATTCTGATGCATGGTGATGCAGCATTTGCTGGTCAAGGAGTGGTCTATGAAACATTCCATCTTAGTGAACTGCCCTCATACACCACTCAGGGCACCATACACGTTGTTGTCAACAATCAGATTGGTTTCACCACTGATCCACGAATGGCACGCTCTTCTCCTTACCCCACTGACGTGGCTCGCGTGGTCAATGCACCAATCTTTCATGTCAACGCAGATGACCCTGAGGCTGTGATGCATGTGTGCAGAGTGGCTGCAGAATGGAGAAGCACCTTTAACAAGGATGTGGTCATTGACCTGGTGTGTTACCGACGCTTTGGGCACAATGAGATGGATGAGCCCATGTTTACTCAGCCTCTCATGTACAAGCAGATTCGCAAGCAAGAGCATGTACTGAAGAAATATGCAGACAAGCTTATCTCTGAGGGAGTGGTTACTCTGCAGGAGTTTGAGGAGGAAGTGGCTAAATATGACAAAATCTGTGAAGAAGCGTACACCAGCTCCAAAGACGAGAAGATCCTACACATCCGCCACTGGCTCGACTCACCCTGGCCAAACTTCTTCACAATTGAGGGTGAACCCAAGCGGATGAGCTATCCTCCTACTGGACTAAACGAGGAAGTCCTGAAGCACATTGGCAAGACTGCCAGCTCTGTCCCTCTGCAGGACTTTTCCATTCACAGTGGACTGTCAAGGATCTTACGAGGCCGGTCTGACATGATTAGTAAACGTACAGTGGACTGGGCTCTGGCAGAGTATATGGCTTTTGGCTCCCTGCTGAAGGATGAGATCCATGTGAGACTGAGTGGACAGGATGTGGAGAGAGGAACCTTCAGTCACCGTCATCATGTCCTGCATGACCAGGAGGTGGACAAGCGGTTTTGTGTCCCAATGAACCATCTATGGCCGGACCAAGCCCCTTACACTGTGTGCAACAGCTCTCTGTCCGAGTATGGAGTTCTGGGTTTTGAGCTGGGGTTCGCGATGGCTAATCCCAATGCACTTGTGTGTTGGGAGGCTCAGTTTGGGGACTTCCACAACACAGCACAGTGCATAATTGACCAGTTCATCAGTTCAGGTCAGGCCAAATGGGTCCGCAACAATGGCATCGTCCTGCTTCTGCCCCATGGAATGGAGGGAATGGGGCCAGAGCACTCGTCAGCACGGCCTGAGCGTTTCTTGCAGATGAGCAAGGATGACCCTGATCGCTATCCGGAATTCACTGGAGACTTTGAGGTCCAACAGCTTTTTGACTGTAACTGGATCGTGGTCAACTGCTCAACACCTGCCAACTACTTTCATGTGCTGAGGAGGCAGATCTTATTACCATTCAGAAAGCCGCTAATCATTTTTACTCCCAAGTCCTTGCTGAGGCTTCCTGAAGCCCGGTCCAGTTTTGATGAGATGACCACAGAAACAAAGTTCAGAAGAATCATACCAGATGAGGGTTCTGCATCGAAAAATCCAAGCAAGGTGAAGAGGGTCATCTTCTGCACTGGAAAAGTCTACTATGAGCTGGCAAAAGAGAGGAAACAGCTCAAGTTAGAAGATGTGGTTGCAATTGTTCGACTGGAACAGATATCACCATTCCCTTTTGACCTCATCAAGGCTGAAGTTGAGAAGCATCCTAATGCTGAGCTCATCTGGTGTCAGGAGGAGCATAAGAACATGGGTTATTATGACTATGTAAGACCACGCTTCCTCACTGTGCTGTCCAACAAGAAACCAATATGGTACGTTGGTCGGGACCCTGCTGCAGCCCCAGCCACAGGAAACAAGTTCACCCACCTGGCAGAGCTCAAGAGGTTCATGGACACTGCATTTGACCTCAGTGCCTTTGAGGGAAGGAGCTTTTGATACTATTCTATGCTTTGTTTAGATATAGTGATTTGACCTCATATATGCCTCGCTCTCAACGCACATTACTAGCTCACCTGTAGCTTCAGAGATAGAGCTTTCACTTTTTTAGATGTAGATGATCTATGCAATCATATTTAGCAGCCTAGCAGAAAACAAATAAGCACTGTGTAAGGTAATATTAAGCATAACATAGGACGTGAGAACAATTTAGAAGAAAACTGATTAGCATAGTATGGTGaactgcaatatatattgtatttactgtaggtCAACACAGATCACATcacacagttgtttttttatggagTATGAACACTTTCTGACTAAGCCATATCCTTATtcccttatctctctctctacttacTGTCACACCTGGCTTCATTCTGAGACATCAAACAGATGGCATAGCGACAAGTAGCAATATTCTCTGTGGCTGTgcattattctattttttttttct

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294658 lncRNA upstream 282159 17395039 ~ 17395249 (+) True G217222
TU294550 lncRNA upstream 412977 17264130 ~ 17264431 (+) True G217140
TU294516 lncRNA upstream 616827 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 667610 17009574 ~ 17009798 (+) True G217109
XR_002651981.1 lncRNA upstream 779014 16883041 ~ 16898394 (+) True LOC111196035
TU294793 lncRNA downstream 76270 17776766 ~ 17777086 (+) True G217313
TU294837 lncRNA downstream 330130 18030626 ~ 18039352 (+) False pax2
TU294853 lncRNA downstream 399458 18099954 ~ 18161772 (+) True G217359
TU294858 lncRNA downstream 416706 18117202 ~ 18124261 (+) True G217362
TU294867 lncRNA downstream 451705 18152201 ~ 18154348 (+) True G217368
XM_022684748.1 mRNA upstream 4547 17633776 ~ 17672861 (+) False parg
XM_007249481.3 mRNA upstream 4551 17633776 ~ 17672857 (+) True parg
XM_007249480.3 mRNA upstream 45374 17579198 ~ 17632034 (+) True LOC103043107
XM_015605854.2 mRNA downstream 55472 17755968 ~ 17760796 (+) True LOC103045248
XM_007249487.3 mRNA downstream 60830 17761326 ~ 17766791 (+) True LOC103045557
XM_007249490.3 mRNA downstream 100245 17800741 ~ 17809379 (+) True LOC103046358
XM_007249491.3 mRNA downstream 303757 18004253 ~ 18039347 (+) True pax2
XM_007249492.3 mRNA downstream 303757 18004253 ~ 18039347 (+) False pax2
XR_002651919.1 other upstream 501675 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 669871 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 4329775 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 4361246 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 4362208 13315112 ~ 13315200 (+) True trnay-gua_10
TU294912 other downstream 611410 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1042737 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1136866 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 1467367 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 1642498 19342994 ~ 19345401 (+) False rrp12

Expression Profile