RNA id: XM_007249520.3


Basic Information

Item Value
RNA id XM_007249520.3
length 7130
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC103028339
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18376648 ~ 18634603 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTTGACACTTCAACTTGCCGTGCACTACGTTAGTTGATTCAGGCAGTCTCACACTCTGGCCAAACGCTGTGCGCTGCTTCCCCCCCATATTTACTAGTTAGCTAGTGTTTGCGAAGTAGAAAGGAGAGAAATAGCACGCGCCTTCTTCAGTCAGGCACGAGGATTTTTTGTTCGGGTTTTCCGGCGCCGTGCTTTTTGACTGGATCTGAAAGTGCGGTGGAGCCCAGTGTAGAGCTGAGCCTGGAGAGGGACCTCCCCCACGGACTATATGACgggaggggagggggagggggggctgCCTACAAGACGACACGCCTGCAGACCAAACAGACCACCTCTATGATTGATGAGGATATAGGAGTGGATTtgctaaacactaaacaaagaAACCTACTGCATCCTCTGGGAGAAGAACTTTAATGGCTTccaggtagagagaaagagacagcaaTCAAGATGAACTCGATTCCTTCGATGGACAGGCACATACAGCAGACCAATGACAGACTGCTGTGCATCAAACAGCACTTACAGAACCCAGCCAATTTCCAGACCGCCGCCACAGAGCTACTGGACTGGTGTGGTGACCCGCGAGCCTTCCAGAGACCCTTCGAGCAAAGCCTGATGGGATGTCTGACGGTGGTGAGTCGTGTTGCGGCGCAGCAGGGTTTTGACCTGGACCTGGGCTACCGGCTCCTGGCTGTGTGTGCAGCCAACCGCGACAAGTTCACCCCAAAGTCAGCAGAAACCAACACCTGCAGGAGATGTCAAAGTGACTCAGCTCTTCTGTCATCCTGGTGCGAGGAGCTGGGTCGGCTGCTCCTGCTGCGGCACCAGAAGAATCGGCAGAGCGAGCCTCAGGGCAAAGTGCCCATGCAGCCACCCATGAACTCCATGAAGCCCTCACtttcccacagTGATGGGCCTTTTCCATACGACTCCGTTCCGTGGCAGCAAAACACCAACCAGGCCCCAGGCTCGTTGTCAGTGGTCACAACGGTGTGGGGGGTTACCAATACATCGCAAAGTCAGGTATTGGGTAACCCCATGGCCAACACCAACAACCCAATGAACCCTGGAGGCAACGGAATAGGGTCCGGCATGTCAGCCAGCAACCCCGGGATCAACTCCCCTCAGTTCCCCGGCCAACAGCAACAGTTCTCAGCCAAAGGGGGCTCCAACCAGGCCTACATGCAGCAGGGCATGTACGGACGAGCGGGGCACCCCGGAGCCGGAGGCTTCAGTGGGAGCTACCCGGGTGGTCCGAACGCTCCAGGTGGAATAGGCATGCCTCCTCACACCCGGCCGCCGTCGGACTTTACCCAGCCCGCTGCTGCGGCCGCCGCAGCTGCTGTCGCCGCAGCCGCTGCCACGGCGACAGCTACTGCCACGGCCACAGTGGCCGCCCTGCAGGAGACCAACAAGGACATGAACCAGTACGGCCAGATGTGCTCCTCATTTCAGATGGGAGCCACGCAGGGCTACAGTAACCAGTTCATGAACCAGCCCGGACCCCGGGGTCCCCCGGCCATGGGAGGAGGCATGAACCCAGCTGGCATGGGCGCCGGTATGAACAGTTCCAACCTGAGTGGGCCGCCAATGGGTATGAACCAGCCCCGCCCTGCAGGGATGGGTCCTTTCGTAGGGCATGCTCAGAGGATGCCCCAGCAGGGTTATCCTGGCCCCAGGCCCCAGTCTATGCCCATGCAGGGCACCAAAAGGCCCTACCCTGGAGAGcCGAACTATGGTGGCCAGCAGTTTGGACCTAACGGTCAGTTTCCTAACCAGCAAGGGCAGTACCCTAACCCAAACGCCTCCAGAGCACTGCCCTCACCTAACTACTCTGGTCAGAGGATGCCAGTCCAACAGGGCTCTGGCCAGTATCCCCCTTCAGGAGTGGGCATGGGACAATATTACAAGcaAGAGCCATTCAATGGACAGAGTAACAATTTTTCTGGAGGCGGTTATGCCTACAGTCAAGGCAATGGGCCACCTCGGCAAGTTGTGAACTACCCTCACTCGCCAGTCCCTGgcaaccccaccccacccatgACTCCTGGCAGTAGCATCCCTCCATACCTCTCGCCTAACCAGGACGTCAAGCCTCCGTTTCCTCCTGATATGAAACCAAACATGACGTCTCTGCCTCCACCACCGACTAACCCCAACGAGGAGCTGCGTCTAACCTTTCCTGTGCGGGACGGGGTGGTCCTGGAGCCCTTTAGACTGGAGCACAACCTGGCCGTCAGCAACCACGTCTTCCACCTGCGGCCCTCCGTCCACCAGACACTCATGTGGAGGTCTGACCTGGAGCTCCAGTTTAAGTGCTACCACCACGAGGACCGGCAGATGAACACAAACTGGCCAGCGTCTGTCCAGGTCAGCGTCAACGCCACCCCACTCACCATCGAGAGGGGGGACAACAAGACCTCCCACAAACCCCTGCACCTGAAGCAAGTGTGTCAACCGGGGAGAAACACCATCCAGATCACAGTCACGGCCTGCTGCTGTTCTCACTTGTTCGTGCTGCAGCTGGTGCACAGGCCGTCAGTGAGATCCGTCCTACAGGGGCTGCTGAAGAAGAGGCTCCTGCCTGCAGAACACTGCATCACCAAAATAAAGAGAAATTTCAGCAGTGTAGCAGCGTCCTCTGGGAACGCCACGCTGAACGGCGAGGACGGGGTGGAGCAGACAGCCATCAAAGTGTCCCTCAAGTGTCCCATCACGTTCCGGAGGATCCAGCTCCCCGCCAGGGGACACGACTGCAAACACGTGCAGTGTTTTGACCTGGAGTCCTATCTGCAGCTGAACTGTGAGAGAGGAACGTGGAGGTGTCCTGTATGCAATAAAACCGCATTATTGGAGGGTCTGGAAGTGGACCAGTACATGTGGGGAATTCTCAATGCCATCCAAAActcAGAGTTTGAAGAGGTTACCATCGACCCCACGTGTAGTTGGCGGCCGGTGCCCATAAAGTCAGACGTGCACATAAAGGAGGATCCAGACGGACCTCTGGCCAAGCGCTTTAAGACCATGAGCCCCAGCCAGATGATCATGCCTAACGTGATGGATATGATCGCGCAGCTGGGGCCAGGACCCTCACCCTACACCTCCCTCCCCCCTCAGCATGGAGGGAACAGCACGGAATACGGGGGCCAAGGCAATAGTTACCAGGGCCATGGAAACTTTGACTTTCCACACGGTAACTCTGGCGGAGGAGCTCCCATGAGCGATTTCATGCACGGCCCGCAGCTCTCCCACCCTCCGGACGTACCCAACAACCTCATGGGCCCGGACAAACCTCTAGGCCATGGCATGCCCGACTCGATGCCTCATCCTGTGAGCGCTGAGCAGTCCCATGCTTCCATGCAGCCAGGCATGCACGCATCCCCCCACCCCAACAGCCAATCAGCGCAGCCATTACATCACAGCGGCCCCCCATCCTCCCAGCCCCCACGACAAGCCCCACCCCCACAGCAGCAGCCCGGCCCCAACAGCCACCCGCACGCTGACATGACCTTCAACCCGGCTGCCGAGGGCCAGGTGGGCGGCCAGGGACCGGCAGACATGCCTGAACCCTCTCTGGATCTGCTTCCAGAGCTGGCAAACCCAGATGAGTTACTGTCGTACCTAGACCCTCCTGACCTCCCAAGCAACAGCAACGACGATCTGCTCTCCCTCTTTGAAAACAACTGACTTCTCAAATCTTCCTTTACCCAAGGCACTGACGTGATTGGCTGTCAGGAGTCGAGAAGCACCCTGAACACCAAATCCAGAACTTAACAACAAGCGCAAaacactcttcctccctctgccTCTTACTCGTGTAAATATCTCACTCTTTTATGGACGTCCTTTTCCACACATGTAAGGCAGCCATGTTGGTTGGCACTAAAGTGATATCTTTCAATactaatatgaaaaaaaaagacaaaaactgtGCAGCTATAATCAGttcatatgaatataaatatatatgtcacACAGAACTGTATGTGTGCTCACTAGGAAAGTGttgtagcatttttttaaattcagattttttttccttttgtgaAAAGCAAGAcctgaatagaaaaaaaaaaacacaaaaaaaaatcttcctgTGACTGgcgcgggtgtgtgtgtgtgtgtgtgtccacaaGCTCTGAGGTTTGTTCTTCCAAGCTTACCACCATGGCTTCTCAATAACCCCCCGTCTGGTGTTCTCAGCTGGATGTCTGCACTGTTCATCTGTcagtgatgaggatgatgagtcCCTTGGaataaaaaagcacaataaGAATTTTATCAAACTGCAACAGGAAGACTGCAAAAGGAAACATCAAAGGGAAGAATGCTTGCATCACAGTCACGGAATGGAGAGAATCCACATCAGAGTGATCTGGTACCCCATCAAAGAGACTTATAACGGTGGGCAATGGAAGTCCATCAACGCTCATATTCAAATATTCGAACATAGAACATGTGAACGTGTGTTCCCTCCTAGGGAAAATCCTTCAGCTCTGCATATCATTATTATGTGAcgtgtcatcatcatcatcatcatcatcactaccaTTTTGCTCATCGTTGTCACTCATGCGTGTTCATTCAAAAAGTATAAAACGCAAAACAAGCTCCAGAGAGCATCCTGacaattcctttctttttttttttcgtcctttttttttatatatatgttttttgatGAACACGCCAACACTGTATGCCTGATTATATGGTGTTACTATACGCATCAGTAACCAGCACTGTACCTCCTTCACCAAATCTCCATCATCTCAGAGTGCTGTGGAATCAAACTCAAAGAGGCAAGGAAATTCATGTTGTAAAGTAAGAAGTAAAATGcaatcactttttaaaagagtttagTAGTTTATAACAGCATCTAAGTGTTCCAACATCAGAACCGAACCCTCTATCAGCTAGCTGTCTTTTCTGGGGGTCTTTCCCCCATTAATGCATGAGCTTTAGTCCCTCCCAGGCCTGTGATGTCTTTTAAACCCTTTATGACGAGACTGCATACAGTGTGTTTAATGTGCACTTGTGCCAATCACCCCTTGTTTTAGTGATAGAAACGAGTGTAGACTGATTAATTTttcgtttcttttttctttttttttttaaatcagtgctTTCAGACGTGTTCCTCTGTCCTGTTTTTATTCAGCGTTTTAAGTACATGAACTTCGATCAGGTAAAGGATTCTGTTTGTTCTGCGCAGTATATGTTTCTCCCCTGGTGTTGTAACTCTAAATGTACAGTGTAATGTGCGTTTACTACGATATGGCCATGTATCACCAAAGTCCGGCGTTGTGCTTGGAGGAGGTGACCCAAACATCTTAGCGAGGTAATATCTGGGGGTTTTATGATGGTTAAAGCATGTGACATCTTTAGTTCCAGCACGGCATTTACATAAGAGTTGTAGTTATGATACGGTGGTGTATGGTACAGTACCCTTTTCTCTTCTTTACTAATGAGTAAGTCCCTCATTTGTAGATGCTATATGTCTatacaaaatcataaaattcaATTTGTTGACTGTGAGTAAACCATCAAAATCATTCTTCAAACCTGGACCCATTtctcctcaacacacagccaatgcaaacaaataatgtttaaaatatatatatttttttcttgttctgttttttttttttttttttgtacgcCATCTCCTCAGCCCAGTCAGAAGTTCAGGAAATTACACATCTCACACCTAACAGACGTTACAGATTACTGTGATTACAATTATACTGTTCTGTTACTGCAAAGAAAAATGCTTTGCCcctttttattgtaatttatacCCTTTGTTAATAATCagactgtactgtatgttcacAAATacgttttcatgattttccattAGAGGTTTCTGCTGGAGCAATACTGTCTCTCGTATGAGCTTACAACTGAAACAAGACCATGGAGTTTTGTTGTTTGCATATTTACCCcttttaaaacttattttgcatcttaaattattttgtattacatttttttagtgaGCAGTTATGTACAgaccttttgtttgtttgtgaaataTTTGAAATCCTTCGAAGGAGCAGGAAAACGCTGCAGTTCTCCACTTCTAAATcacatatatgttttatttgtcgtatatattttatgtatacgGATGCACTGCCGCGTATTGGTTTCCACGTTTTAGACACATGCAGACCTGAACCGAACTGAAATCTCAAAAATCACTTCCACTACTTGGGTCACACTTCAAGCTGAGCGTAGTCCGTGTTGTAGACCCGTCACTTACTCGTGGTTCGTGCGGTCgctgaggagagagaagagCGTAAGGCGGGGTGGAGGAGGTTGTCGCGGTGGCGGTGAAGTGAGTCGAGGCGTTTGTTCGTCCCCTACTCAGCCACAGGTCTGGATGGGAAACGGTGTGGAAGAGTGCAGGAGCTGGAGCAGGGGACATAAGGGATGCATGTACATATGTAAATGACAAATAGAGACACGTTAACAGAAATGTATTCATTTTCCCCAGGGGAATGTGCATTGTGTATTTAGAATTTGTAAAGCTTGCATCCTCCTAACAGACTCGAATTGGGTAAAATGAATCTGTGTTTGTTAGCGTCTGTGGAACCTCTcgccattttctttttttccccacttaTGTAAAATATTTCCAGCCCGCTCGACAGGGGAACTGCGGGAGGGGGAACGAGACACATTTGTTTTGTGTAATATTTAGCTTATGTGTATTGCTCCATTACCTGTGTACTCTATAAGGTGCTACAAAAAAACCATGAAGAAAATCCTGGGGAATAATTTGGAGGATAGGGACGTGGGGCCTGGAGTGGTTCCAAAAGATTGTAACCAAATTCATAGTTTGTACAATTTTGATATCATGATCAGagagaaacaacaacaaaaaaaaaaacacgacaCAAAAAAAAGGTACAATCTGAGGTGATTGGCGCCTGAAGTGGCAGTTGTCTTTTGGTTTGTACATTCTGTGTACAatcatttcatattttaaactgttcAGAAGAAAAAACAACTAATTGTGATTTTTAGTCTTGCAAAACTGTATGTAGTTAGATGCTGTGACATCCTAATATTTATCTAATAAATATGTATTCAGATGAAACATGGTCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294947 lncRNA upstream 5265 18423830 ~ 18424763 (+) True G217420
TU294861 lncRNA upstream 209459 18187590 ~ 18220569 (+) True G217364
TU294856 lncRNA upstream 262128 18163382 ~ 18167900 (+) True G217361
TU294870 lncRNA upstream 272001 18154405 ~ 18158027 (+) True G217369
TU294867 lncRNA upstream 275680 18152201 ~ 18154348 (+) True G217368
TU294961 lncRNA downstream 47359 18681962 ~ 18689693 (+) True G217431
TU294964 lncRNA downstream 53769 18688372 ~ 18695794 (+) True G217433
TU294971 lncRNA downstream 63390 18697993 ~ 18699151 (+) True G217435
TU294975 lncRNA downstream 79448 18714051 ~ 18714310 (+) True G217438
TU294983 lncRNA downstream 83702 18718305 ~ 18773411 (+) False G217439
XM_022684756.1 mRNA upstream 76998 18349740 ~ 18353030 (+) True rps24
XM_007249517.3 mRNA upstream 76998 18349740 ~ 18353030 (+) False rps24
XM_007249518.3 mRNA upstream 77011 18349740 ~ 18353017 (+) False rps24
XM_007249510.3 mRNA upstream 92207 18322590 ~ 18337821 (+) True LOC103025593
XM_007249508.3 mRNA upstream 112800 18311893 ~ 18317228 (+) True eif4ebp2
XM_007249524.3 mRNA downstream 1465 18636068 ~ 18640875 (+) True LOC103029282
XM_022684893.1 mRNA downstream 2332 18636935 ~ 18640875 (+) False LOC103029282
XM_007249530.3 mRNA downstream 96994 18731597 ~ 18732521 (+) True c25h10orf10
XM_007249529.3 mRNA downstream 108603 18743206 ~ 18744327 (+) True LOC103030769
XM_022684782.1 mRNA downstream 202741 18837344 ~ 18847024 (+) True cxcl12
TU294912 other upstream 113204 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1254295 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1422491 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 5082395 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 5113866 13316075 ~ 13316162 (+) True trnay-gua_11
TU294985 other downstream 108630 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 202759 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 533260 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 708391 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1385811 20020414 ~ 20074343 (+) True G217874

Expression Profile