RNA id: XM_007249530.3


Basic Information

Item Value
RNA id XM_007249530.3
length 796
RNA type mRNA
GC content 0.48
exon number 2
gene id c25h10orf10
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18731597 ~ 18732521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTGCCTGTGTCTGTAGAGCAGATCAGATCAACCAGCTCACAGACTGAGAGCAAGCATCAGCTACGAGTAGCGAGTTTGAGCACTAAAATCACCTGTCAGGCGACTCAGATATTGATTACAGAATGAAGCCCAGAAGATTACTCCTGTCCATTGCTCCTCTGCCCACCATAACAGAGACACATGAGGATGCTTCTCAGGTGGCATGTCCGGCCACCCCCTTGCAGTCTCTGGAGGAATATGTCAACTCCATTAAAGAGCTAGCCCAGCCAGCCTGTGGTCCAGTGAGGATGGCAAGGACTCTAAGGACTCGTCTGTTCTCCAAGCCTCTGGGAAAACACTCCAGCACCAGCTCGCCTCGCAGCTCCTCCAGGACTCCTCGGGCTCGTTCCAATTCTCTGGGCCTGGACGAGCGAACCCGCCACTTCAGCAGCCAGAAAGACTGGGCCAGCAGGGACCCGGTGGACTGGCTCTTTGGACAGACGCAAGACGAGCTGCACAGGACTGACTGCGCGTCTGCTGCTTTAAGGTTACTCTAATGACCTGCAGCCCCAAAAAGCAGACACACTGCATAGAACTCTGTTTGGAATGTGACCCTGTGGACGGAGGAATGTTAATGCTACCACTAGGCATGCTGTGCCCTggactttataataataataataataataataataataatagtttaatttatttgcttCATTAGGGACTTTGGTCCTATTGTTTCTATGTTTACACTCTGATGAGTTttttctactctttttttaataaaaaagaacaaaatgttgttttgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294975 lncRNA upstream 17287 18714051 ~ 18714310 (+) True G217438
TU294971 lncRNA upstream 32446 18697993 ~ 18699151 (+) True G217435
TU294964 lncRNA upstream 35803 18688372 ~ 18695794 (+) True G217433
TU294961 lncRNA upstream 41904 18681962 ~ 18689693 (+) True G217431
TU294947 lncRNA upstream 306834 18423830 ~ 18424763 (+) True G217420
TU294986 lncRNA downstream 14871 18747392 ~ 18750080 (+) True G217442
TU294976 lncRNA downstream 21396 18753917 ~ 18758188 (+) False G217439
TU294978 lncRNA downstream 21396 18753917 ~ 18758188 (+) True G217439
TU294980 lncRNA downstream 21396 18753917 ~ 18756591 (+) False G217439
TU295017 lncRNA downstream 206504 18939025 ~ 18939903 (+) True G217472
XM_007249524.3 mRNA upstream 90722 18636068 ~ 18640875 (+) True LOC103029282
XM_022684893.1 mRNA upstream 90722 18636935 ~ 18640875 (+) False LOC103029282
XM_007249521.3 mRNA upstream 96994 18430028 ~ 18634603 (+) False LOC103028339
XM_007249529.3 mRNA downstream 10685 18743206 ~ 18744327 (+) True LOC103030769
XM_022684782.1 mRNA downstream 104823 18837344 ~ 18847024 (+) True cxcl12
XM_007249533.3 mRNA downstream 177425 18909946 ~ 18938453 (+) True ercc6
XM_007249534.3 mRNA downstream 209727 18942248 ~ 18948011 (+) True drgx
XM_015605843.2 mRNA downstream 209730 18942251 ~ 18948011 (+) False drgx
TU294912 other upstream 414773 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1555864 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1724060 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 5383964 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 5415435 13316075 ~ 13316162 (+) True trnay-gua_11
TU294985 other downstream 10712 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 104841 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 435342 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 610473 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1287893 20020414 ~ 20074343 (+) True G217874

Expression Profile