RNA id: XM_007249538.3


Basic Information

Item Value
RNA id XM_007249538.3
length 2303
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC103033826
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19080725 ~ 19089231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAATCAGGACCGTGCAGTTGGGCAGTAGTAACGGTCGGTTTCGCTTGTTGTGGCTGTCTTCCCTTGTCTTGTTGTTTGGTTAGTTGGCAGCAGCTTCCGTTGCTTTTTCCCAGTAAAGGAGAAAGTTAGACATTATAAATGAAGATCTTGTTCTTTCAGCACTGAGGCTGCTGTTACCGCCACGGTGATGCGGTACAATGTCTTTAAGTACAGTGACTGGAGGAAGCGGGGTGTTTGAGGCTGTTCAGAGAGGAGATACCGAGCGGGTCACCCAGCTCATTGAAGACGACACGACCGTCTTACAGCAGAAAGgttGGGGTGGTTTTACTGCCCTTCATTTTGCTGCTCTTCATGGAAACCGTCCAATAGCTGAGCTCCTCTTAAATTGTGGAGCCGATCCCAACATTCCTTGTGATGCAGGACAAACCCCTTTTCACTTTGCATGCCGACATGGCAACATCAGCATCATGCATAAAATGCTGCAGCATGGTGCAGACCTGGCTGCTGTGGATCTACAGGGGAAAACATCACTCCACCATGCAGTCAGTGGGGGAAACATTGTTGCCATGCAGTATCTGTCAGAGACCACCATGTTCCGGTTTTCAGATGGTGATCACTTCCAGGTCACTCCTCTACACATAGCTGCTTCCATGGGGAATACTGATGTGGTCAGGTACCTTCTACGCAACAATAGATGTGCAGCAGATGCAGTGGACCAGCAGGGGGCGACAGCACTGCACGTGGCTGCAGAGAAGGGCATGATTGAGGTGTGCTGGCTGCTACTGCAGAGTGCGGGATTCCACATTTTACACATGAAAAACCACACTGGCCTCACACCTCTAGACCTCTGTAATCACGGAACCACTTATAGACATCAGCAACTCAGCAAAATCTTAACTCCATTCTACAATAAACCAAAAGATCAGAAACCCAAAGAGTCATATGTGGTGTACTACTGGATGCTTTTGGTGCCCAGTCTCAGTGGGGCAGCAGTGCTCCTCATAGCTGCAGCACTGGGAGAATATGGAGGAGTATTTTGTGGAGTGTTCTTTCCCTGGATGGCAAAAGTCACCCTTTCACAGTACCACAGAATGAGCAGCTATCAGAAGTTACCAAATCCCATCTATCTGGGAACTCTGACTGCAGGCATCGTTCATTCCTTAGTCTGCTTTTACTATAAAATTCTTCCTAGTATTTGGCCAGCACATACACTTTTGCATGTTTCAGTTCTCCATTTCTGTGTGCTTCTTGGGCTTTTCTGGAAAGTTCTGAGACAAAATCCAGGCCGACTCCGAGCAGCTGATGCAGACCACAGGTTCGCCAGCATAGCTGAGCTGCTAAAGGCCAATCAGAATCCCAGTCGTTTCTGCATTTACTGCGAGCTATTTCAAGTGGATAACTGCAAGCACTGCCGCCTGTGTGACTTTTGTGTTCTGGATTATGACCACCACTGCCTCTTCCTCAACCACTGTGTTGGGCGCAACAACCACCGGACCTTCATGCTCTTCATCCTGGCCATGATTGTCGCGCACCTCATCTTCGTCAGCAGCGCTGGCTTTTATCTGTACAGGAGGCTGGCCTTGGAGGAGCACtggagctggacctcagtagcAGGGAGAGAGGCTTGGGTgctcctgctgctcctgctcAACATCCTCACTCTCGTCTGGCAGGTCTGGCTGCTCACAGAGCAGTTTGATGCCATTTCCACTGGAAGCACCAGCTACTTTAGACACTCTCACCGTAAGAAGCTTTCTTGGAGAAAGCGTCTTGCCACAGTTCTCTCTTTTCTGATTGAAGGGAAGAGTTTTAAAGGCCTTCAGCAGAAATCTGTTGACATTTAGTATTAAAATTATCATTTCGGTCATAGACATTTCCTTCACTTCAAAACTCGGGGCTGATTTTATAACTGTGAACTAAAAATCACACCATTTCCTGGTAATGCATCTGTTTCTGTTTACACAAACttgtaatttcctttttttgcacCAAGCTTATTTTCTAAGATTTTAACACTGGCTTACTTCAAGACATTTCATTAATTACTGTGAAATAGGCTTTGAGTTCTTGGGAACTTAATGAACTGTTAATTATTGAGAATTTTTTGTGTAAGTATTAAACCTTTTTCCCCCTCATTTCATTATGTAACTCCCTAGGTCCCCACAAAATCATTGGGGATGCAAACATTTGTATACCTTTGTACAAATATAGTCAATGTCAGGCATGTACAATATGTACAAAATGTCACACAGTCCATGGATTGTCATgagtatttaaacattaaacatggtCTAAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295017 lncRNA upstream 140822 18939025 ~ 18939903 (+) True G217472
TU294976 lncRNA upstream 322537 18753917 ~ 18758188 (+) False G217439
TU294978 lncRNA upstream 322537 18753917 ~ 18758188 (+) True G217439
TU294980 lncRNA upstream 324134 18753917 ~ 18756591 (+) False G217439
TU294986 lncRNA upstream 330645 18747392 ~ 18750080 (+) True G217442
XR_002651918.1 lncRNA downstream 130282 19219513 ~ 19231760 (+) True LOC111195980
TU295330 lncRNA downstream 183706 19272937 ~ 19273154 (+) True G217696
TU295359 lncRNA downstream 273447 19362678 ~ 19365255 (+) True G217715
TU295434 lncRNA downstream 408833 19498064 ~ 19518320 (+) True G217768
TU295453 lncRNA downstream 494850 19584081 ~ 19584405 (+) True G217784
XM_007249535.3 mRNA upstream 60979 19017307 ~ 19019746 (+) True LOC103032870
XM_022684784.1 mRNA upstream 90675 18975059 ~ 18990050 (+) True LOC107197625
XM_022684785.1 mRNA upstream 90675 18975251 ~ 18990050 (+) False LOC107197625
XM_007249534.3 mRNA upstream 132714 18942248 ~ 18948011 (+) True drgx
XM_015605843.2 mRNA upstream 132714 18942251 ~ 18948011 (+) False drgx
XM_022684789.1 mRNA downstream 6519 19095750 ~ 19144236 (+) True LOC103035106
XM_022684790.1 mRNA downstream 9001 19098232 ~ 19144236 (+) False LOC103035106
XM_022684791.1 mRNA downstream 27194 19116425 ~ 19144236 (+) False LOC103035106
XM_022684793.1 mRNA downstream 71422 19160653 ~ 19214321 (+) False LOC103040131
XM_022684794.1 mRNA downstream 78631 19167862 ~ 19201067 (+) False LOC103040131
TU295009 other upstream 233697 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 336494 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 763901 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1904992 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 2073188 17004595 ~ 17007537 (+) True borcs7
XR_002651927.1 other downstream 78632 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 253763 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 931183 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1323013 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 2971735 22060966 ~ 22096652 (+) False mark3

Expression Profile