RNA id: XM_007249549.3



Basic Information


Item Value
RNA id XM_007249549.3
length 2268
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103036761
representative True

Chromosome Information


Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19263976 ~ 19269426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AACAAGTGTAAAGTGAACAGGTTGAGTGATACGTAGCGGATCAGGCGACTGAGgagagttgtgtttttttagagcTTCAGAACGACAGAAAAAAGGCCAGAAAACGACTGAAACGGGAACAGCGTAGGCCTGAATGGAAGATAACTTTCTGGGGAAAGTTTACTGCGCATGGTCAGACGGTTATTGAGCGTTTAAAAGACTTTTAGTGCTTTCTGACTCGCTCACGTGCTGTATTTTTGAAGCCTAGTTGGTTTCTTGAACTTGctgtggtttatttattttaatatggcGCTGAAACGCCTGTTTTTGCTGCACctgccgccgctgctgctgctgctggtgtcaGAGTCCGTGTTGGGAGAAGCCCCCAGCGCTGAGGAGCGCACTGACAGCACGACCACCGACATGCTGGAGCAACACATGTTCAAACTGTACGAGAAATACAGCAGAGTAGCGCAGGAACCTAAAGAGGGAAACACTGTGAGGAGTTTTAAAGCAAAGACTGAAAACACGGCGCAGAGAGTTTTGTACCGTCTGAATCTAACCTCCCTCCAAGAGTCTGAGGTGATTCTCACAACCACACTGCATTTCTTCTTCGATAAACGCCCACGCCAGAGGTCCTGGTTCTGCAAGCGCCTCAAGAACCCCTCCTGCCGCATCCAGAACCTTCACCAGCTGCCTTCCTTTCGCATCCTTTTCCGATGTCCTTTGTCTGGCTCTTCTCCGGACTTGCTGCTTGGAAACATCACCTTGTATCCTCACAGACGGGGGATTTGGCAGACCAAAGATGTCTCACACATTATAAAGGAGGCGAGAAACAGGAATCGGCTTGTTGTAACACTGGAGTTTGATTATGGAGAAAAGTACCAGAAGTATCAGGACCAGTTGCCAGCATCCAGCCTACCATACATGCTGGTGTATGCCAATGACCTGGCCATATCTGAACCTAACAGTGTGGCTATGAGCTTACAGAGGTATGACCCCTTCGTCGCAGATGAGCAGACCACTCGCTCTCCAAATTCTTCGCCTGACGTGCGAGTCAAGCGGGACTtgtattttcctgaccccatcCAGAACAATGAACTCCCTGAGGTGGAGTACGACAGCTTCAAGCAGCACGATATGTGGGAAAGCACTTATCAACCGCTAAAGCCAAAGCCCTCtaagaaagagaggagaaagaaagtTCAAGAGCACCCTGACAGACTGAACAAGTCTCAGGTTCTCAGCTTTGATGAGAAAACCATGAAGAAAGCAAGGAAGAGACAATGGAAAGAGCCTCGCAGCTGCACCAGGAGGTACCTGAAGGTGGACTTTGCAGACATCGGCTGGAGCGAATGGATCTTGTCTCCGAAGTCCTTCGATGCATACTACTGCGCAGGAACCTGTGAATTCCCCTTACCTAAGATTGTTCGCCCTTCCAACCATGCAACCATCCAGAGCATAGTGAAGACAGTCGGTATCATTCCAGGCATCCCAGAGCCCTGCTGTGTACCTGAGAAAATGAACCCCCTCAGCGTCCTCTTCCTGGATGAGTCCAGAAACATCGTACTAAAGGTTTACCCTAACATGTCTGTGGAGACGTGTTCTTGTCGATAGTCCTGAAGATCAAAGCAGTGATGGCAGAAATAAGTGTTGTGGTTACAACACTAAAAGAACTAAACGTGAACAAGAGGCATATTGTCTTTTATGTTGTTTAAAGGATGTGCTCCCTCCATGTACACTCTTTATTACAGCTTATAGTTTTCTGTTAGTTGCAGTAAACAGTGTACAGAAAATTctgtgtacttttttttatttgtgatgtGCGTTTTATTTTGGTGAACTTGTCTTGTCTATGAGAAGACCACGTGTGTATAATTGTTTGAAGACGTGGTTTAGGTGTTATTGCATTGCTGCTTTCTATGTACATAAAACCTAAAAATGAGCCATTATTTAAAGATGGTCCTTACGGTCTATATTACTAACATTAAGTAGTACAAAAGCTTGGTTTGTAAAGTGCCATGTAGAAATTTCATGGTGGAAAGTGAGTTCATGTAAATGTTGGAATGGAATGAAAATCAATGTCCATAGTGTAGCACTTTCCATGCAACAAGAAGCCCATGTTTAAGTAAACAAAGTTCTTGGTTTGAGTTACtttaaatagtataaaatatttaacactcCTTCGGAACTGTGCTTTCATGTCAAGCATGCATCCGAAAGCATTGGTAGAAACCTAATTCCAAACAGTTCAGTCTCAAAACTAATAAAGAGACTTTGAATCCA

Function


GO: NA

KEGG:

id description
K22674 GDF10, BMP3B; growth differentiation factor 10

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_002651918.1 lncRNA upstream 32216 19219513 ~ 19231760 (+) True LOC111195980
TU295017 lncRNA upstream 324073 18939025 ~ 18939903 (+) True G217472
TU294976 lncRNA upstream 505788 18753917 ~ 18758188 (+) False G217439
TU294978 lncRNA upstream 505788 18753917 ~ 18758188 (+) True G217439
TU294980 lncRNA upstream 507385 18753917 ~ 18756591 (+) False G217439
TU295330 lncRNA downstream 3511 19272937 ~ 19273154 (+) True G217696
TU295359 lncRNA downstream 93252 19362678 ~ 19365255 (+) True G217715
TU295434 lncRNA downstream 228638 19498064 ~ 19518320 (+) True G217768
TU295453 lncRNA downstream 314655 19584081 ~ 19584405 (+) True G217784
TU295456 lncRNA downstream 329552 19598978 ~ 19599243 (+) True G217787
XM_022684792.1 mRNA upstream 46987 19167871 ~ 19216989 (+) True LOC103040131
XM_022684793.1 mRNA upstream 49655 19160653 ~ 19214321 (+) False LOC103040131
XM_007249547.3 mRNA upstream 49655 19196661 ~ 19214321 (+) False LOC103040131
XM_007249548.3 mRNA upstream 49655 19199762 ~ 19214321 (+) False LOC103040131
XM_022684794.1 mRNA upstream 62909 19167862 ~ 19201067 (+) False LOC103040131
XM_022684798.1 mRNA downstream 10744 19280170 ~ 19316024 (+) True LOC103037070
XM_022684799.1 mRNA downstream 54480 19323906 ~ 19345404 (+) True rrp12
XM_007240388.3 mRNA downstream 103147 19372573 ~ 19374811 (+) True mettl18
XM_007240386.3 mRNA downstream 114723 19384149 ~ 19387991 (+) True marveld1
XM_007240382.2 mRNA downstream 504890 19774316 ~ 19804731 (+) True LOC103037144
XR_002651927.1 other upstream 60460 19167863 ~ 19203516 (+) False LOC103040131
TU295009 other upstream 416948 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 519745 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 947152 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 2088243 17167018 ~ 17175733 (+) False LOC111195981
TU295347 other downstream 73568 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 750988 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1142818 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 2791540 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other downstream 2791541 22060967 ~ 22096652 (+) False mark3

Expression Profile