RNA id: XM_007252231.3


Basic Information

Item Value
RNA id XM_007252231.3
length 1794
RNA type mRNA
GC content 0.45
exon number 15
gene id fancl
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 15516738 ~ 15542681 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAGTTACCGGGGGACTTTTTTCTTCAGGTCTTCACATAAAGTTTTCTTTCCTGAAAGTTTGATGACGTTGTTaatGGCTGATAACTTGCTTAAGGAGAGTCCTTTATTAGTTGCACTTGATAAGAACAGGACTGTTTACGACGGATTCATCTCAGTACAGGAGAAAGACTTCAGATTGAGAATATCTCTGCCCCCAGACCATCAGCTGAAACGGGCAAAATTGCACTGTTGCTGGCAACTAAAACAGCTACTGAAAAATTATCAAGATATCGTAAAACAGAGGTTGCATCATTCTTCAGATTTGGTCAGTTTTATTTTGGAGCTGAGGACAATACTGGAATTGGCTTTGAAGAGCCAGCCAGGATGGCAGTCCATCCCACCACCTCAGTACTATTCACAGCTCATCACAGAAATAGAGGATCTAGGATGGGATAAGCTGCTCTTCATCGATACAAATTTCCAAAGTCTTCAGCTGAAGGCAGAGGACTCTTCTGGTCGACAACATTCTATTACAGTCAAGCTTAAGTCCAAGTACCCAGGTGAAGCTCCAGAATGCTCTGCAGACCTCCCAGTCCCACTGGTCATTACATGGACCTCCCAGAGCACTCTAGCTCACATCCATAGCCAGTTCCTGCTGATTGTGGAAGCTTTGGCTGAGTTCTGGGCAGTGCTGGACGAGATTGATGAGCACACTTGGGTGTTGGAACCTGAAAAACCCACCAGAGCTGACTCCATGAGGAGAATCGCCATTGGAAACAACGTCTCCATAAAGCTTGAGATTGATCCCAGACATCCCAAGATGTTGCCAGAGTGCTGCCTGCTGGGAGCTGAGCACGTGGTCACCCCCCTGAGGAATAAGCTGAATGCTAACATGCATTTATGGAACCCTGACTGCAGTGTCCTACAGAATATGAAGGATGTTATGGAGATAGAATTCCCGTCGCCTGCCACCCACGAAAAATCTagCTTCAGTGTGGAGTGCGGCATCTGCTATGCTTATCGTCTCGATTCGGCCATCCCAGATCAAGTCTGCAATGACCCACGCTGCGGGCAGCCATTTCATCAGGCCTGTCTCTATGAGTGGCTGAGAGGTTTGCCCACCAGTCGTCAGAGCTTTAATCTTGTGTTTGGTGAATGTCCCTACTGCAGTAAGccaatcaccgtGAAAATGGATGTTCAAAAATCATAACCTGCACAAAGTGAATCTACAGTATTTCAGTGCTAAGGCAATGCTGAAGTGTTTGATCTTGGAATATTAGTGTAAAACAACGCCATGTTTAAAAAACTCTGACAACTGCCAGCATAATGAGAAGCACAGCAACGACAATGCCTGCATACATTTTGCGGCTCCAGTGTGTACGGTTTATGTTTTGTGCGTTATTGCAGTTACTGTGATTGTGCCTGTACCAGTCATCTCTACCATCATAATCACTCCTACTCCATTGCTGTCCATCATTCTCCCAGTCGACTTCCTCCCAGAAGGTAtgattctggttctggttcttcCAGTAGCCCTCGTCACTGGGTCTTCTTGCGCTGTAGTCATCATATGAGTGACCGTTTCTTCCCCAGTGGTCAGGGACATCTGTGTTATACTTCGGGCGAAGAATTTGGTCCCTCTGTCGTCTTCTCGTGGGCAGCCAGgcctcatcctcatcctcatctgTTCTCCTGGTTGTAGACACTGGAGCCAACTTGTTTTTCCcaccaaaataaatatatagtattttcCATGTCAGTGTTATTAGTAGTGTtcatacaacaaaaataaaaataaatgtaaattaatttg

Function

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651915.1 lncRNA upstream 593460 14911999 ~ 14923278 (+) True LOC111195977
XR_002651914.1 lncRNA upstream 604751 14892201 ~ 14911987 (+) True LOC111195976
TU293854 lncRNA upstream 736425 14768261 ~ 14780313 (+) False bcl11a
TU293856 lncRNA upstream 771419 14744717 ~ 14745319 (+) True G216541
TU293846 lncRNA upstream 815000 14696928 ~ 14701738 (+) True G216532
TU294127 lncRNA downstream 126837 15669518 ~ 15669736 (+) True G216793
TU294169 lncRNA downstream 372250 15914931 ~ 15923311 (+) True G216831
TU294240 lncRNA downstream 566048 16108729 ~ 16109441 (+) True G216893
TU294241 lncRNA downstream 575178 16117859 ~ 16128583 (+) True G216894
TU294242 lncRNA downstream 575178 16117859 ~ 16125941 (+) False G216894
XM_007252237.3 mRNA upstream 736464 14722400 ~ 14780274 (+) True bcl11a
XM_022684680.1 mRNA upstream 876195 14639866 ~ 14640543 (+) True LOC111195974
XM_015606612.2 mRNA upstream 904170 14609488 ~ 14612568 (+) True pcbd1
XM_007252242.3 mRNA upstream 904190 14608175 ~ 14612548 (+) False pcbd1
XM_015606620.2 mRNA upstream 1010892 14493853 ~ 14505846 (+) True sec23ip
XM_007252228.3 mRNA downstream 307171 15849852 ~ 15854753 (+) True LOC103023506
XM_007252227.3 mRNA downstream 351924 15894605 ~ 16015675 (+) True slc24a3
XM_007252226.3 mRNA downstream 474719 16017400 ~ 16022839 (+) True LOC103022884
XM_007252224.3 mRNA downstream 482139 16024820 ~ 16086964 (+) True rin2
XM_022684688.1 mRNA downstream 501290 16043971 ~ 16086964 (+) False rin2
trnat-ugu_90 other upstream 2169105 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 2200576 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 2201538 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 2412696 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 2800833 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 1461914 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 1624337 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 2769225 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 3200552 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 3294681 18837362 ~ 18847028 (+) False cxcl12

Expression Profile