RNA id: XM_007252248.3


Basic Information

Item Value
RNA id XM_007252248.3
length 7108
RNA type mRNA
GC content 0.42
exon number 20
gene id inpp5f
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14454016 ~ 14479060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtctctctctctctctctctctcattcacggAGGAGGAAAATATCAGAGCCGGAGTCAGACACGACACAACATGTCGCTCGGGTTGTTTGGTGAAGTGTCTGTGTTGAGATGGGAAGTAGGACTATTAGCTCGGGAACACAGTAAACAGACGTCATGCCGACGTTTATTGTAGTATAAGGCGAGGCTGAGGTTTGGGTTGGTAGTCAACGTTAGTTAAGCTAACCTAGGATAGCTAGGTTAGGTTACGTTATATATAGATTAGATAGGCTAGCTGTCGATGCCCAGCTGATTGAACTGGCATTAATCAGTACGGGAacacgttagctagctcgccggcTAACTGCCAGTCGGCTGGCTTGATGTGTTCTGCCCGCTGGCTTCTCGGGCCGAATGTATCGTTAGTTGGCGGGTGTTTAGGGCTGAATAATTATAACTACATGTTTTTGGTGTGACCTGCAGTCGACATGGAGCTGTTTCAGGCGAAAGACCATTATATTCTCCAGAGCGGCGACAACGCGCTGTGGTGCAGCAGGAAGGACGGCTCCCTCAGCGTGAGACCCGCAACTGATTTGCTACTAGCATGGAACCCTATATGTTTGGGACTGGTGGAAGGTGTTATTGGAAAAATACAGCTTCATGCCGACTTTCCTTTGGGCCTCGTTCTGATCCGCCAGAAAGCACTGGTGGGCTTGTTGCCAGGAGACCACAAGGTCTACAAGATCACCAAGATAGCAGTCATTCCACTTTCAGATGAAGAACCACAGGACCTGGAGTTAGAGctTTGTAAGAAGCACCATTTTGGAATCAACAAGACAGAGAAAATCACTCAGTCTCCTGATGAGTCCAAGTTCCTGTTGAAGACTTTTAGTCAAATCAAGTCTAATGTTGCTGTTCCCATCAAGAAAAAGGTAAAAGAGAACAAAGAAAAGGAACGTCTGGAGAAGAGACTGCTTGATGAGCTCTATAAGATATTTGTGGATTCCGATTCCTTTTACTACAGCCCCACGTATGACCTTACAAATAGTGTCCAGAGACAGGGAGCATCTGAGAAGTCTGATCTGCCACTGTGGAAACAGGTGGATGACAGATTCTTCTGGAATAAACACATGATACAGGACCTAATTAACCTACAGGTTCCTCAAGTGGACTTCTGGGTGATCCCTATAATCCAAGGCTTTGTGCAGGTGGAGGAGTTGGTGGTGAATTATAACGACAGCCCTGATGAGGAGAAGAGCAGCCCAGACACGCCACCACAGGAGCACACCTGTGTGGACGATATCCACCCTCGCTTTACTGTGGCACTCATTTCCAGACGGAGCCGCCATCGTGCAGGCATGCGTTACAAACGCAGAGGAGTGGACACTGAAGGACATGTGGCCAACTATGTAGAAACGGAGCAGCTAATCCATGTACATAGTCACACACTGTCCTTTGTGCAGACGCGAGGGTCGGTCCCTGTTTTCTGGAGCCAAGTTGGGTACCGCTACAATCCCAGACCGCGACTAGAGAAAGGAGAGAAGGAAACCGTTCCGTATTTTTCTTCGCATTTTGAACAGCAACTAAAGATATATCAGAAGCAGgTCATCATCAATCTAGTGGACCAAAATGGGCGTGAGAAGATGATTGGCGACGCATTCCTCAAACAAGTGCTGCTGTACAACAACCCCAACTTGACCTATGTCTCTTTTGATTTCCATGAGCACTGTCGAGGGATGAAGTTTGAGAATGTGCAGACTCTCACTGACGCTATTGCTGATATCATCACTGACATGCGATGGGGATGGGTGGACCAAGCAGGAGTCATCTGTACGCAAGATGGCATTTTCCGTGTCAACTGCATGGACTGCCTGGACAGGACTAATGTAGTTCAAGCTGCTATCGCTCGTGTGGTTATGGAAAAGCAGttgAAGAAACTGGGGGTGATGCCCCCTGAACAGCCGCTTCCCCTAAGGTGTTACAGGATCTACCAGGTGATGTGGGCCAATAATGGTGATACCATTAGCCGCCAGTATGCCGGCACAGCTGCTCTCAAGGGGGATTTCACACGGACAGGAGAACGCAAACTGGCAGGAGTGATGAAAGATGGTGTGAATTCAGCTAATCGCTACTATCTAAACCGCTTTCGTGATGCATACCGACAGGCAGTCATTGACCTCATGATGGGTCTTCCTGTGACCGAGGACCTGTATTCCATCTTCAGCAAAGAAAAGGAACACGAGGAGAAGGTGAAGCAGAGCCAGAGAGGAGCACAGGAGCAGGTCAGCCTCCTCTTACAGACGTACATgcagctcctgctgccagaTGATGAGAAGTTCCATGGTGGCTGGGCCCTCATTGACTGTGACCccagCCTGATTGATGCAACGCACAAAGATGTGGATGTCCTTTTACTGCTGTCCAACAATGCATATTATGTTGCGTActATGATGAGGAGGCAGATAGAGTTAATCAGTACCAGCGTCTCAGTTTAGAAGGTCTGGAAAAGATTGAAATAGgcCCAGAACCAACTCTGTTTGGCAAACCCAAATACTGCTGCATGCGACTGCATTATAGAAACGAGGAGACGAGTGGTTACTTCCATACCCTGAGAGCTGTCACACGAAACCCAGAGGATGATGGAAAAGaCACACTGCAGTGCATAGCAGAGATGATTCGCATCACTAAACAAGCTATGGGACTTGATCTACCAGTAATAGAGAAGAAGTTGGAAAGGAAACACAGTAAACCACATGAAGACATCATGGGCATTCAAGGAAAAGCCAATGAGCAAATGCTTGGCTCAGGCTTAGCTCAGGGCAAAAGTTTCCTCATGAACAAGTTCTCATCCTTAAATCAGAAAGTAAAGCAGACTAAAACTAATGTCAACATTGGGAACTTCAAGCCCCTTGGTAGACTTGGCAACTTTTCCAAGCCAGAAGTGAAAGTAAACTTCTTAAAGCCCACCATGCATGTGAACCTCTGGAAATCAGACAGCAGTTTGGAGACTTCAGATGGGAATACAGGCTCTGGAGGCCTTAAGGATCTTCGTGATGATCATTCAGATGCGGGGATCTCCTCCGACTCTGACTCTTGCAATTCAGATGAGCAGCCATGTTCAGGCTCCCTGGAAAACATAGACTATGTTCTCCCCAGTTGTGGCATTGTAGCATCTGCACCTCGACTTGGCAGCCGCTCTCAGTCCATTGGTAGTGTGGAGCTCGCTGTGCCCTCTGTTATTCGTGTTACAGGCTGCGAGAACAAGGTAGAGGACAGTTTATCAGTTGAAGCAAGTGCTCAGTCCCCTGGGGCAGCCTCCGAAGCAGAAGAAGCCATTTTGATTGACTTTGGGACTCCTGTTGACGCTTACTGCCACCAGTTTGTCCAGGATGCCCAGATAAAACCAATAGAAGTGTTTGAGGAACATCCAGTACTGCCACCAAATTCGCTGCCATCTCAGGGTCCAAAGGTTGCATCAGCTACAGGCACAAAGCCAGATTCATCGAacccacagcagcagcagcagcaacagctccCTCGTCCTTCACAGCTTGATGTAGAGCCTACCGTACCAGGGGGATATCTTCTTACCGTCCAGCCTCCAGGTTCTGCGGCGTCATGCGGCTCACAGAAGAGCTTTGGCTCCCATGTGGAAGGAAGCCTAGGGCCTTCCCCAGCAGACAGCAATGGAAGTCGAGTGGTGTCTCCCTTTGCAAAGATCAAGAGCTCCATGGTGCAGGTAGCTAGCATAACCCAGGCAGGACTCACCCAAGGTATCAACTTTGCTGTGGCAAAAGTGCAGAAAAGTCCAGAGCCAGAAGCAGTCAATGAGGTCCAGGAGAATGAATTGCGAGCGATGTTTACACAGTGCCAGACTAGGATTATTCAGATAtagcgtgttttttttttttggcttcatGCATATACATGCATTCTGTATGTTTTTAGCTTAGAATGGGACTTCCAGCACAGTAGCAGTAGCATAAGCTTGCACAAACAGTGTACAGAGTCAGCTAACTTCCCTACTCCTTATTCTCCGCTAGTTAATCCAACTGATGTTTACAGCTAGTGTTGTGTAAGTATATAGTATACACCTAAGCTGAACCTGATCTGTGCCCTTATGAAAAAAAGTCCTTAATATCCATACATTATTACCAGTTTTGCATGTTGAGAAATTGGTCTAGAATAGGTCAAAAGAGAGAAGAGGACCTAATTTTGAAACGTGTGACTCCTGCTCCGCATCAGTCGAGTGTTGTAGCTATAGCCGAAACATGTAGTACAATAGCCAGATTCATAAATATCTATTCAGTGGGCAGCTCAGTATTAGACAGTAGAATAAAAAGAGGAACGTAAACAAAATACATAAGTATAGCTCAAGAAACGTCTTTGTTGTGGTGTATATCAATAGAAATGTACCAAAGTAGCAACAGAGTACTAGGTCATAATCTATGGTTAAATAATACTATTGTCCTGTATGtaattagtatattatataaaaaaaagaacagtactGTATGAGTCTTCTGACGTTGAACCCTCCATtcaatatatttagatatatatgtatatagatatacataCGTTTCTTTATCGTGATGATTGAGAAGAATACCACTTCAAATGGGCACTTGAAGCGCCTCGAGTTGTTAGACATTTCTATATGCATTAGCGTTAATGAATTAGAAATCCCGCTTAAAGGTACAATAAGTAAAAAATTTCATTACAGCTTGATACAGTGTTTATCTCGTTATTTATTGGTGGTTAAATGGCTCTAAACAGTTTGTGAGCTGGAAAACTGCCTTTCTTTTCTACTACCATAGTTTGAGCGATTTTGTGCGGTGATGAAATATAATATGAGTAAATACAGGCTGCATCATTGTGAATTCACGTGTTTGACAAACTGTGTTTATAATCATAAACAAATCGCAAACTAGTATTACTTATTGTACCTTTAACCATATTATCATGTTGCGTTACATGggggaaaaaatctatttattaaaactattatataCGTTTTCTTTCTAAATTATACAAGTGACCTGTTATGTTACGTTTTTCCTAGAAATGCAGTAGGATAATGGCAGTGGTCAGTGTCTTAAAATATCCTTGTGTAAAATGTTCTATTCCTCTAAAGGGTTAAAGTCTATTTGCAATGAAGGCCTGCATCAGATACCTGCCTAaatctgttgtgttttaaaTACGTTTTTGTATTTCCGATTTCCGAATGAAAACTGACTCAAAATAATCTGTATACTTACAAATAACAATGTTTATATGAATATGcatataatactatatataatacTGCTTATGACTCCTTATGACTGCTTGTAACTCCTCTTTAAGCAGGTATTTGATGTAGCTCAGATGCAAGAAACCCTGGCCaaatgttaaaaacactgtaaaatgctTTTTGCACTCTTAAATATCAAGAGTAAGCCTTATATTAAGAATATTAAGTGCAGGTATTTTCTGACAAATCTACCTTCATATTCaatgtttataaatgctttcattCAGGTTCTATTTTGCTGGGTCTGCAGTGTAGTAAAATCAGATTTATGCCACGTTAATACTGTTTGTTGATGTTTTGAAGCTCAGGCTTGAGATCTGACCTTTGGGGTGCTTCTGTTTGATgtgatatttaatataatggAGGAAATATGGGGCTGTATGAGGCCACCTTACCTGTGAGGcctatttttctttaattaccCCACTATAATGTTATGTCATGTAAGGGGCACTGTTACAAAGACCACTTTTTATTCCAGCAGTTCTGTATACAATATTTTGAGGCTAGTCTGTAGCATGTGATCATGTTGCAGTGAATACCGTCTCTTATTGCTAAAAACTTTTTATAGCCCAAAGCAGaccaataataaatacattttgtctgGAAGAAAAGTTTCTGTAGAACGTGTGATGGCAATTAAAGCTTATTTAAAGTAGGATGATGCTTTAGAAGAGCTACAGTTTACTGTTAATCCTCAGACAAAATGACTGGTAATATTGTTGAGACTGGCTTGATTCAGAAATATATAAGATGGTTAGCTGTTTTATCAGGTTACTTTTGATAATCTAGTGGACTAGAACAGATTTTTAAGAAAGACATGGTCATCTCAAGCCTGAGGGTTGATGGgttgttttgtcttttatgAATCATGTCTTTTAAACTGCAATCTTTTGTTTACTCACTTGCTGTATGGAGCTTCATTATTCATGCATGCTTTTACTTACTGTGTAAGTAAAAGAAACCCACTATTCATTTCCTTAAACCCTGTAGGACCTGGTACATCATTCTGGTACCTCCTGACATACCATCGGCACTGTCTGAACTTGAATAAGGTGGTAGTATAATGCTGTTTTCATTATATGTATGTTGGGTAAATGGGTTTGGTTTATAGGTTTTAGGAGTATTTTGGTTTTTAAGCATTTGATGGCATGCACTGAACTGGAGACTATAGTGGAAACTTAAAACATTCACACAAGGAAGTggtacatacatttaaaatcttCCAAAAAGCATTAACCTGCTGTGTAAGTAAACATTCCTCCTGTTATGGGTGTTCACTTAagcttttccttttattttgtgtttcatGTACGTTTTCCTGTATTTCATTTATGATTTTCTATGCATAAGGAGTTGCACcttccttgtttttttgtgttcccCAAATTTGCTGAAAAAAGGAGTTATTTGACACAAAGTGCTTTTGAAACCTCATTTTATTTGCCATTTATGTCTTTTCCTCACTGAACTGACATGTTGTGCTAACTGAATTTATGTTCTGTctctttgaaaatgttttatttctcagtCATGTAGTGTTCAGTGTCACTTTATTGCACAGCATTCAAGCACACTTTCCAGTATCTTCCCATGTGTGTGATCAATGGCCTCTTCCCCACAAGTGTGTGAGGTGTTTCCAGCCAATGTACCTGAACTTTTATTGTATCGTATAATAGCCTATTTATTCTTAGTCTTATAAACTTCATAAACTTAATTCCCTGTGTTtgctaataacatttaacagttGTGTATAAatgctgtattttaaaatgttaagggGCATATCTTGGAGGTTCTTTAAGTAAATAATTGAAAGGAAA

Function

GO:

id name namespace
GO:0042578 phosphoric ester hydrolase activity molecular_function

KEGG:

id description
K21798 SAC2, INPP5F; phosphatidylinositol 4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293730 lncRNA upstream 13613 14432109 ~ 14440403 (+) True G216437
TU293728 lncRNA upstream 50552 14402585 ~ 14403464 (+) True G216435
TU293688 lncRNA upstream 99197 14353101 ~ 14354819 (+) True G216410
TU293686 lncRNA upstream 102103 14351568 ~ 14351913 (+) True G216408
TU293685 lncRNA upstream 106691 14347261 ~ 14347325 (+) False gsto1
TU293738 lncRNA downstream 8699 14487759 ~ 14488523 (+) True G216441
TU293813 lncRNA downstream 135086 14614146 ~ 14616451 (+) True G216505
TU293816 lncRNA downstream 138258 14617318 ~ 14618083 (+) True G216508
TU293815 lncRNA downstream 144600 14623660 ~ 14630795 (+) True G216507
TU293829 lncRNA downstream 163858 14642918 ~ 14645082 (+) True G216520
XM_007252251.3 mRNA upstream 3145 14442676 ~ 14450871 (+) True bag3
XM_007252252.3 mRNA upstream 23275 14418969 ~ 14430741 (+) True LOC103031316
XM_022684677.1 mRNA upstream 23275 14418969 ~ 14430741 (+) False LOC103031316
XM_007252276.3 mRNA upstream 42593 14410095 ~ 14411423 (+) True atoh7
XM_007252253.3 mRNA upstream 58948 14382714 ~ 14395068 (+) True LOC103031627
XM_015606620.2 mRNA downstream 14793 14493853 ~ 14505846 (+) True sec23ip
XM_007252242.3 mRNA downstream 129115 14608175 ~ 14612548 (+) False pcbd1
XM_015606612.2 mRNA downstream 130428 14609488 ~ 14612568 (+) True pcbd1
XM_022684680.1 mRNA downstream 160806 14639866 ~ 14640543 (+) True LOC111195974
XM_007252237.3 mRNA downstream 243340 14722400 ~ 14780274 (+) True bcl11a
trnat-ugu_90 other upstream 1106383 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 1137854 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 1138816 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 1349974 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 1738111 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 2525535 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 2687958 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 3832846 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 4264173 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 4358302 18837362 ~ 18847028 (+) False cxcl12

Expression Profile