RNA id: XM_007252259.3


Basic Information

Item Value
RNA id XM_007252259.3
length 3703
RNA type mRNA
GC content 0.43
exon number 22
gene id chuk
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14331197 ~ 14339931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCACTAAGCTTGTTTCGATTTCGAGTGCTAGCGCTAGCCAGTTTGTTAGCTGTATGTGAGGCGCTGGTCTACAGCGTTTGTTCCTTTAGTCGTTGAAGAAATCTCGATTTTAAGCTTTGTGTTGTAGCGTAGTGCTGTTTAGCGGCTGTTATCTGGGCCGGTTTTGGTGTTTCAGGGAGAAGTGCTGGTGTGAGGCTGACTTTTCTGAGCTAGCTCCGCTGCTAGCTGCGGTTACCTAATTGACTGCTGCATTACCCCAAGTTGTTTACGTGTAGCTGGCTAACGCTAACGCGGCTAGCTGGCTCGCTGTTTACCAAGTAACGTTAATAGCAGTAACGTTGCGTTTTAACGGGGCTTCGCAAGGATGACATGGATGTCGCCGTTATTCTCTACGAACTGACATATTCCATTATCTTCACATCTGGCACATTATCTTCACATCACAAATTACAGGCTACTTTCAAGCTAGCCACACAGATTGGTGAATCAGACCAGACCGGGCAGCGatggACAAACCACCTTTCAAACAGACTCAAGTATGTGGACCCTGGGCTATGAAGGAGAGGCTAGGAACCGGAGGATTTGGTCATGTGTATCTTTACCAACATCAGGAAACCGCTGAGAAAATTGCAGTGAAACTCTGCCGGCTTGAGCTCAACgcaaaaaacaaagacagatGGAGTCGAGAGATTCAGATCATGAAAAAATTGAACCACATCAATGTGGTGACAGCACGGGATGTACCTGAAGAGATGAAACACATTGCCTTGAATGACTTACCTCTATTAGCCATGGAGTACTGTTCCAGAGGAGATCTTCGTAAGttgttgAGCAAACCTGAAAATTGCTGTGGGTTAAAAGAAAGTGAGGTGCTGTCCCTTCTTAATGATGTCGgTTCAGGAATTCAGTATCTCCATGCAAACAAAATCATTCACAGAGACTTAAAACCAGAGAACATTGTGCTTCAAGAGATTAATGGAAAGttagtACACAAGATTATAGATCTGGGCTATGCAAAAGATTTGGATCAAGGTAGCCTTTGCACATCTTTTGTGGGAACTCTTCAGTATTTGgcACCAGAGCTGTTTGAAAGCAAGCCGTATACAGTCACAGTTGACTACTGGAGCTTTGGCACAATGATCTTTGAGTGCAGCTGTGGTTTTCGTCCTTTTCTACACAATCTACAACCTGTGCAGTGgaCAAGCAAAGTGCGTAACAAAGGCCCAAAAGACATCATGGCTGTAGAGGATATGAATGGAGAAGTCCGATTCAGCACTCATCTCCCTTATCCCAATAATCTCAGCAGGACTCTTTTGGAGCCTTTGGAGAGTTTGCTGCAGTTGATGCTGAAGTGGGACCCAGTGCAAAGGGGAGGTGCAATGAACCCTGACACTAAACAGCCACAATGCTTTGCACTTCTTGAGCAAATATTGAACATGAAGGTTGTACACATCTTGAACATGACCACAACAGAGGTTCACTCTTTCCTGCTAAACCCTGAGGAGGGCCTCCACTCCCTTCAGCAGAGAATTGAGACGACGACAAAAATCGAACACCTGAATCAGGAGCTCCTGCAGGAGACGGGAGTAATGCTAGATCCAAGGAAGCCTGCAGCACAGTGTGTCCTGGATGGAGTTAGAGGATGGGACAGCTATATCGTGTATCTCTTTGACAAGAGCCTAACCAAGTACTCTGGACCCTTCACTCCAAGGGCACTCCCGGAGAGCGTAAACTTTATTGTACGTGAGACCAAGACTCAGCTTCCCTTGAGTGCCCTTAAAAAGGTTTGGGGCGAGGCAGTGAGTTACATCTGTGGCCTTAAAGAGGACTACAGCCGCCTTTTCCAAGGACAAAGAGCTGCCATgttgaGCCTTCTTCGGTATAACACAAACCTCACTAGATACAAGAATCTGATGTTTTCATGCTCGCAGCAATTGAAAGCCAAGCTCGATTTCTTTAAGAGTAGTATCCAGTATGACCTGGAGAAGTACAGTGATCAGATGCAGTATGGAATATCCTCTGAAAAGATGCTGAAGGCTTGGCAAGACAATGAAGAAAAGGCTGCTGCTTTTGTTCAGGTTGCAGAGGTTGGCCACTTGGATGAAGAGATTATGGCCCTGCATTCTGAGATTGTTGAACTTCAGAGAAGTCCATATGCCCGACGCCAGGGAGACGTAATGGAGCAGcttgaggaaaAAGCTGTTGAACTCTACAAACAGTTGAAGGCAAAATGCAAAATGAACGATCCTCAGCATGGCTACAGTGACAGCTCTGATATGGTTAAAGTCATTGTCCAGACAGTCCAGAATCAAGATCGAGTACTGAAGGATCTTTATGCACACCTCAGcaaaattctGCTGAGCAAACAGAAGATCATTGACTTATTCCCGAAGATAGAGAAGACCCTAGAGAACATTAAGGAAGCCGACAGCACGGTCATGCAGATGCAAATGAAAAGACAGAGGGAGTTCTGGCACTTACTTAAGATTGCCTGTGCTCAGAACACCACACGCAGCCACAGCACAGAGATGTCGTCCTCTTTGTCAGCCTGGTCCCATCCGCCGTCATCCTGCTCACCACGACTTCCTATGTCTCTTCACGCAACGCCTGACGGTGAAACTGTCAGCCATCTCCTGGAGGAGAACCAGAGGTACCTAAGTCAGCTCACAAGTTTGCTGCAGGAGACCTCTGATGAGAAGTCTGAGAGTATAAtgGATCAAGACTGGAGCTGGATTAGATATGAATCCCTGATTGCAAAATCACAACGTTTATAGATTTATTGATATGCTAATGACTGGTGACCAGTTATTCTCTGATCAACGATTAATAAGCTTCACAAGATTGGGTTTCTTTTGGCATTTACCTTTTTTTCAATCGAGTAACTTGTTGAATTCATGGTTTGAAGTGTTGTAACAACAATCCCATTTATgtcatgtatttttaaatggcaCAGCAGAACCAACTGTTAGCATACTTCATACATACAGAACAAATActcaagtatttatttattataaaccaAATTAATATGTTCTCTATGAgctgatatattttattttatttttaaaggttttatgcatcttgtttGGATTAGAATTCTACTGATCAGCAACAGCACTTTAGAGGCTCACTGTGAATGTTTGGGTGGGTCAACGGTTTTATTGCATAGAAAAAAACTTGGCTTGACCTGAAGATTATCATAAATCTTAGACAGAGCTATTCTTGGAATAGATATTTGAGAGtcagaaaaataattatgaatGCAGGAGTCAGAGCAGCTGACCTTAAAAGGAAAGCAATTATTAGTCAGATCTCTGGTTAAGAATGGTCTGCCATGGTCCATGATTGTAAAGTGTGAACCCAAAGGTGCTAACGTTgatagtttttctttttcatccTTTTCCTTAAATCAATGGAGAAGTGTCATAGGTGCAATGTCAGGCCCGAGAGAAGGCTGCATGAACTTGCAGATATGAGAATGTCACTAAAGTGGTATTTAATATCAGTTTTTTTccctattataattataattttctttttgtccAAAGATCAGCTCTACACAAAATGTTGCCACTCAGTACAAATTATATTGTTTCACACTTCATTAATTATATTCCTTTCACTGGCTGACTCATTCATATGATATTTtgcaattaattaattgtttactgtacattacaaataaacataattgttCTCCA

Function

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0007252 I-kappaB phosphorylation biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007417 central nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008384 IkappaB kinase activity molecular_function

KEGG:

id description
K04467 IKBKA, IKKA, CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293618 lncRNA upstream 65848 14255407 ~ 14265349 (+) True G216354
TU293619 lncRNA upstream 68513 14259343 ~ 14262684 (+) True G216355
TU293607 lncRNA upstream 72747 14208439 ~ 14258450 (+) True G216344
TU293603 lncRNA upstream 99493 14151482 ~ 14231704 (+) True G216341
TU293600 lncRNA upstream 267956 14062950 ~ 14063241 (+) True G216339
TU293685 lncRNA downstream 7330 14347261 ~ 14347325 (+) False gsto1
TU293686 lncRNA downstream 11637 14351568 ~ 14351913 (+) True G216408
TU293688 lncRNA downstream 13170 14353101 ~ 14354819 (+) True G216410
TU293728 lncRNA downstream 62654 14402585 ~ 14403464 (+) True G216435
TU293730 lncRNA downstream 92178 14432109 ~ 14440403 (+) True G216437
XM_022684670.1 mRNA upstream 102567 14221906 ~ 14228630 (+) True ap3m1
XM_022684664.1 mRNA upstream 431288 13893420 ~ 13899909 (+) True dupd1
XM_022684665.1 mRNA upstream 443885 13881732 ~ 13887312 (+) True LOC111195973
XM_007252268.3 mRNA upstream 455531 13870201 ~ 13875666 (+) True LOC103035759
XM_007252269.3 mRNA upstream 461066 13866821 ~ 13870131 (+) True LOC103036078
XM_007252257.2 mRNA downstream 2301 14342232 ~ 14347333 (+) True gsto1
XM_007252256.3 mRNA downstream 24750 14364681 ~ 14367185 (+) True calhm3
XM_007252277.3 mRNA downstream 27373 14367304 ~ 14372827 (+) True LOC103038684
XM_022684679.1 mRNA downstream 33900 14373831 ~ 14379174 (+) True calhm2
XM_015606623.2 mRNA downstream 42781 14382712 ~ 14393861 (+) False LOC103031627
trnat-ugu_90 other upstream 983564 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 1015035 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 1015997 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 1227155 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 1615292 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 2664664 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 2827087 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 3971975 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 4403302 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 4497431 18837362 ~ 18847028 (+) False cxcl12

Expression Profile