RNA id: XM_022684960.1


Basic Information

Item Value
RNA id XM_022684960.1
length 3722
RNA type mRNA
GC content 0.46
exon number 6
gene id ppm1b
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27432862 ~ 27467984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGGCCTCCTCCGTGCACATCAGTGAAATGTAGAGACCTTGTTAAGAGCAGCTGAGCAGCTGGAGGCATATCTGTTGAATGCAGGCCTACGTAAGGTCAGACGGTGACCTGAGCCATGGGGGCATTCCTGGACAAGCCCAAGACGGAGAAGCACAATGCACATGGTGAGGGCAATGGCCTGCGCTACGGCCTCAGTAGCATGCAGGGCTGGcgggtggagatggaggatgcaCACACGGCCGCTGTAGGCCTTCCTCACGGCCTGGACGACTGGTCCTTCTTCGCCGTGTACGACGGGCACGCCGGCTCACGTGTGGCCAACTACTGCTCCAATCACTTGCTGGAGCACATTGTGGCGGCCGGCTCAGTGGAAGAGCTGCGGAAAGCTGGTGCTCCTTCACCCGAGACGCCAGCCGTGGAGGCGGTAAAGAGCGGCATCCGCGCCGGTTTCCTGCGCATTGACGAGCACATGCGCAGCTTCACAGACCTGCGCAACGGCATGGACCGCAGTGGCTCCACGGCTGTGGCTGTGCTGCTCTCGCCCGAGCATATGTACTTCATTAACTGTGGCGACTCCCGAGCGCTGCTCTGCCGCAACGCGCACGTCTGCTTCTCCACGCTGGACCACAAGCCATGCAACCCACGTGAGAAGGAGCGCATCCAGAACGCTGGGGGCTCAGTCATGATCCAGCGGGTTAACGGCTCACTAGCCGTGTCAAGAGCGCTTGGCGACTACGACTACAAGTCTGTTGAGGGCAAAGGCCCTACGGAGCAGCTGGTGTCACCCGAGCCTGAGGTGTTTGAAATTGTGCGTTCCGAGGCCGAGGACGAGTTTGTAGTGCTGGCCTGCGATGGCATCTGGGATGTGATGAGCAATGAGGAGCTTTGCGCTTTCGTCCGCGCCAGGCTGGAGGTTTCAGATGACTTGGAGAAAGTGTGCAATGAGGTGGTGGACACGTGTCTACACAAGGGAAGTCGAGATAACATGagtgttgtgttagtgtgtttgcCAAATGCACCCAAAGTGTCAGAAGAGGCAGTgaagaaagatgcagagctggACAAATTTCTTGAGTCTCGTGTGGAAGagctcaTAGAGAAAGCAGGCGAGGGGGGCATTCCTGACCTGGTACATGTCATGAGAAACCTCGCCACAGAGAATATCCCAAACCTCCCACCAGGGGGAGGCCTCCCCAGCAAGCACAGTGTTATCGAGGCCGTGTACAACCGGCTCAATCCCCAAAGAGAAGAAGATGGGAATGGTGCAGACCTTGAGGACCCCTGGTAAACCTGCTCAGCCGGAGAGCATGACCCCTTAAAGGATCAATCCCTCTGTCCGGAAGACACCCTTCATacttttatttcccttttttgtaAGAAACCCAGATTGATTGGGATGTCAGTAATGATTTGAACAGAAAAAGCAGCAAATCCAAAAGGATTGCACActtctttttgattttttttttgtttgtcttgcTTAAATATGAGGGAAAAGAGAAGATCTTCAACGTTAGGAAACACATCACAAATCAAAATACACATCAAACAATAAAGACAGACTTTTtgcgctttttttttcttctcttttttgtgGTTGTTGGTGTTCTTGTTGAAACTGATGTTTGGGGTGATGCACGCCCATAAGCGCTGTGGTGCCTTTTTCTAGTCGGCTACGGATGGGGAACTTGGGCTAGTGGCAGATCCACGGCCTTCCGCCCAGAGCACAATAGAACAGATGGGCAAAGTGAGACCACTGCTACCCCCTTAACTTGGAGGGGGGTGCTTATTCAGGATTTCCTTGACTGGTGATTGCATGTGGAACAAGTTTGGAGCAATTGCTACGTTACTACATACCCTGTGTGGAAAGGTTTGGAGCTTGATGGCTTTTTGCACCTTTTACACCCTCTCTCGCCAccgccaccccccccccccccccccccaacaaacacacaagcTCTGACAGACGTTTCTGGAGAGAGACTGCGTCAATATTGCTTCACCCTGCAGTTTATCACTCATTTGGTTGTTATAAGcttttaatcctgctgtttcagagaatatagaatatatagagagagatatataaattcatatattttttccctCCTTGAGTATTGTGTCGTTTATGGCTTACTGTTTAAGAAGCAATAGACGTGACAAAGGTTTGCGTGTTCAAGTCATTCCATGTCAGATCCCTGGGGATTAATGTCCCCTGTCAGAAAGTCCTTGCGGTCActgtcttctttttcttacAGGCCTCATCTTACTACATATCTATAAATATTAGATGGTTGATGTTGAAAATTCAAGAACAGTattagttttaaacatttttcaagTAGGGGCTCTGAGTGGCTCAGCAGAACAAGACACTGACCTAAGGCCTGAGGATCACAAGTTAGAATCCCAGGTTATACTAGTTctcaccatcagcagccggagtctgagagagcacaataattCATGTATTCTCTCGTGACTGagctttctccccacatcatttCCACTGCGATGCTGGCCGGTGCAGGTGCCGTTTGGCGCTTTTCTCCAAGAGCTTTGGCGGCAGTTCAGAAAGGCTGACTTGAtctgtcagaggaggcatgctcTAGTCCTCATTGAAAACTCTtactattaaaaacacaaatatttaaattaaatgttttttataaacCATCTGTATAGAGTTGTAATATGTTTGTTAAATGAAATCCACTGTATTTACTTAAACAATAAACTAAGGATAGTGAACTAAGTAAAGTTTGAGTTATAGAAAAGTGGCCatgaacactaaaaaaaaaacaaaaaaaaaaaacacagctacaGCTACTCCTAATTCTATACCAGATGACCTAAAAAGCCCTATTCTTCAGGAGATTTGATGTGGAATGATTAGTGtgtatgtaggtgtgtgtggCTGGTGTCAGAAGAATGAAGTGTATGAATTACTCTGGACATACTGGGATTGTACAAGTTATGTGCTACTCTGACCAGGTTGCCCCAAAAATCTGTGGGCATTGTATGCTAAAAGGGAGCAACGTGATGCCCAAGAAAGACAAGCTACTACTCATCACCTCCTCCAGCACTTCTCTTTGTATCATATCTCTGCCTTCTTTCCTCCTTTCTCAGTTCTCACCGTCACAATGCACAACTGAACTCTTCAAACAACctgcctttgttttttttttcttttttcttttttgtcctcagagtatattgtaaaatggtgtgggtttttttgtttgttttggttagcTGAACATGAAAATACAAGCTTTATGATGAATTTCTGCATTATTTTCAGACTCAGCGTACAAGTGTGATACTGGTTTTGCTCAAAATGCATTTTCTGGAGTACTAGATGACTTCAGAATTAATTGCAAACATGAGAACTGCAAGGTGAACTTGAGCAGAACAATAAAGATCAAGTAAAAGCTGTTCCTCATCTTGTATTCCAGTGACAAATGCCTTATGTAAGAGTCCAATTAGAAGACGATTTTTTGGCCATTTAGATGCTGTTTTTCGCTTTTCTTTTCGTTCTTGATTTGCTATACACACATTTGATGCAGTCTGCTACTTTGTAAAAGGTTAACTCAGTAAATGTCACAGGAACAATTAGTGTCTTCTGCTATGTGTTTCACCTCAAGaattcttatcatttttaaagttttattcaaGAAGCATGCATTAAATAGCGGTTCCAAGCCCAGATCTCAAAGATG

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298069 lncRNA upstream 35131 27373876 ~ 27408090 (+) True G219657
TU298012 lncRNA upstream 100783 27264767 ~ 27342438 (+) True G219620
TU298058 lncRNA upstream 113013 27312708 ~ 27330208 (+) True G219651
TU298048 lncRNA upstream 139155 27295416 ~ 27304066 (+) True G219643
TU298041 lncRNA upstream 179346 27262554 ~ 27263875 (+) True G219639
TU298361 lncRNA downstream 460550 27928534 ~ 27928739 (+) True G219891
TU298366 lncRNA downstream 479877 27947861 ~ 27948095 (+) True G219896
TU298392 lncRNA downstream 714877 28182861 ~ 28185425 (+) True G219917
TU298389 lncRNA downstream 751711 28219695 ~ 28224612 (+) False G219914
TU298388 lncRNA downstream 751810 28219794 ~ 28224612 (+) True G219914
XM_007255765.3 mRNA upstream 150136 27282600 ~ 27293085 (+) True abcg8
XM_022684956.1 mRNA upstream 206610 27230160 ~ 27236611 (+) False LOC111196018
XM_022684954.1 mRNA upstream 206610 27230161 ~ 27236611 (+) False LOC111196018
XM_022684951.1 mRNA upstream 261304 27094099 ~ 27181917 (+) False cep170
XM_007255771.3 mRNA downstream 5925 27473909 ~ 27492416 (+) True slc3a1
XM_022684963.1 mRNA downstream 42230 27510214 ~ 27711719 (+) True camkmt
XM_007255772.3 mRNA downstream 372860 27840844 ~ 27844241 (+) True six3
XM_007255793.2 mRNA downstream 1022863 28490847 ~ 28551769 (+) True plekhh2
XM_022684972.1 mRNA downstream 1110672 28578656 ~ 28607913 (+) True LOC103033108
XR_002651959.1 other upstream 206610 27230159 ~ 27236611 (+) False LOC111196018
XR_002651967.1 other downstream 1022862 28490846 ~ 28549320 (+) False plekhh2
TU298587 other downstream 1251272 28719256 ~ 28720661 (+) True G220074
TU298732 other downstream 1673383 29141367 ~ 29142018 (+) True G220194
TU298921 other downstream 2319955 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 2319955 29787939 ~ 29793496 (+) False G220336

Expression Profile