RNA id: XM_015607474.2


Basic Information

Item Value
RNA id XM_015607474.2
length 2797
RNA type mRNA
GC content 0.40
exon number 4
gene id mcfd2
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 28735759 ~ 28741543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAGCGGGAAGGGTCAGAACTGCGTGATCCGTCCTGCAGGAGTTTGGAGTGGATTGTTGTTTAGGAGAAGCAAAGGAAGAAGAAAACAagattttcatcattttaaaccGGATAAACCGGAGTTCAGGGCAGGTGAGGAGAGCACTTTAAAATGCAGAGTAGAAGAAGACATGGGCAGTCCACGATAGGGCTTTGGCTTTTGCTGCTGTCCTGCTGCCTGCTGGGTGTCCAGTCCCATGGGGGTCATCATGAGCAAGTGGCTGGGTCACCTCAGGGTGGAGATGCGTACCCTCCCATCACTCGCCTGGACAGGAACATGGTCCAGGACAAAGACCACATCATGGAGCATTTGGAAGGGGTGATCGAGAAACCCGAATCAGACATGACCCCTCAAGAACTGCAGCTCCATTATTTCAAAATGCATGACTACGATGGCAACAACTTGCTTGATGGGCTTGAGCTTGCCACTGCTATTACACATGTACATAAAGAGGAGAGAGGCGAGAACAGCCACCCAATGAAAGAGGAGGAGCTCATCCGCCTCATCGATGAAGTCCTCAGAGATGATGACCGAAACAATGACGGCTACATTGACTACGCTGAGTTTGCGCGGTCACTCGAATAAATCTGATAGAGTGCCTACTGCCTTACTGTGAGCTCTGTTTACCTCTGAAGTACAAATCTAATACTGTTGATAATTTGTGTATTATATGCGTCTCACATCTGTAGGACAGCCTACAGTAATACTCAGATCTCGTCCTGGAGGACCACAGTGCTGCACGTTCCCAGGTTCCCAGGTGATATTCCCAGCCCCAGTACATGCTCTTGACCTCATAAGGCACTTCATAACTGTTGGACAGGAAACTGTGCAGTGCAGTGACCCTCCAAGCCTGGATCTGAGCAGTATGGGCCTACCTCCCATATTACTATAATCTGTCAGAATACTGTAAACTCTGATGGGAAGAAGTCATACGGGTTGTATTGTGAAGTGATGTGCATGTAAAAGTcatcttacattacattacaagaTCGTACAGTACAGCATAATGAACCACGTGATTAACCCCTAATGCATAAACTGccaaacattattttttgtctgctgtaagaaaaaaaaaaaaaacaccctccttttattattactgtactgCCATCTTCTCATGTGTATATGAAATGAGGCATAATtgcatctgtaaaaaaaaaaagatatgatgATGTCTGCCTTACTAAGGAGAACATTTTGATCTGACATGTGTAGAAAGTTGCACTGCGGTCTGTGTTTCATGACCCCCGTGACTTTTCTAGAAGATCGGCTCATGTGGGTAACTGTTGCCTAATGCCAGCTACACTGTTAACCATGCTTCGTGCCTGTGTGAGTTCACATTTCCAAGAAGGACCACATGTTTTTTGCTGACTTCACTGTGGAGAACCAGTTGTAAACCTGTGGGGAACCACTGGTTGATGTTTATGATTACATAATTGCTGttggacgtgtgtgtgtgtgtgtgtgagagagagagagattgtggaacatacagtatttatcaGATTTCTCATTTAAGTGTTATAATtagttttggtttaatgcaCTTAATACAAGTTCTTTAGCTGAATCTTTTACCCTGGTCACATACTCACCTGCGAAGAGTAGTGTTTCCcaattattctaattttcagTTGTGTTTCCAATGGGGAATTACTTAAACTAAGGATTCTTTCATACCTGTAGTTTTTTTGCTCTGGTCTAAATAAGTTAATAAGGGGTGTTTTCCCCCatagtttgatttgtttttgcaCAAGGAAAAAGCACCgaaatacaatacaacacaacgCAACAAACCATGTTATTGGTCAGACCTGTTTAGGGGGGTATCAAGAAAGTAAATTcaggaagaaggtcctgtgttctggCCTTGACAATATTTTGGTGTAATCCAGCTTGGAGCAATGGAAGGATTTCTGAGTAATCTaccaggttaaactgcacctgaacagccatttatCTTAACTTGCATAGTACAGCTGATTTGTTAGGTCACATCGAGGTCGGATTACATTCTTACAACAAACTCAGAGATTGTTTGGAACTAGACAGAGACCACTCCCTTTAGTGGGACacaatacatttgtttttttctgcacctgaatgcaattactgtatttatacctGCCCAAATGAAGCACattaaaagtagataaaaataGAGGTGAAAAGATAAattggtgtgaaaacactcttaAGTTAAAAAAGACAAGTTTCCAACTCATTCATTTTGTTTTGCAGTTTAGTTCACCTGCTGTAACACACTTGTTCCAGGTGTATAAGAGCAGAGACCCCATCAGAATCTGAGGTTTCTAATGCATGACCAGGAAACACACTGACAGCTATGGGTATTTACATATTATAGGCTGCTCAATCTTTCTTTTCTATCACAGAGATTGAATGTAGGCTGAGACTGTCACATAGTGTTTGACAGTCTTATCCTGATTTGAATATACTCAATTGATAAACATGTGTTGAATAAGAAATATTTGTATTGTCCTCTCTTATcttatttaaaatctaaatatttaaggACCCACAGTAGCATTCAAATAAACCTCATCTGTTTAAAACAAGTCATTCAGAATGTAAACCAAACTGTTAAGATTGTTCTATTTTCACAGTTTGATGCTCATGAATTTGTGAATAAAGTAAGACtttaaattgaattatttttgtgttagAACAGTATAGCAATAATTTAGAGAACGTCTTGTGTTTTTGGaactgtaattaataaaatgtgaaataccA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298532 lncRNA upstream 167739 28565015 ~ 28568032 (+) True G220032
TU298533 lncRNA upstream 167739 28565559 ~ 28568032 (+) False G220032
TU298535 lncRNA upstream 167739 28566519 ~ 28568032 (+) False G220032
TU298389 lncRNA upstream 511159 28219695 ~ 28224612 (+) False G219914
TU298607 lncRNA downstream 102927 28844470 ~ 28860775 (+) True G220094
XR_002651985.1 lncRNA downstream 362229 29103772 ~ 29113662 (+) True LOC107197787
TU298761 lncRNA downstream 554544 29296087 ~ 29296359 (+) True G220209
TU298787 lncRNA downstream 670004 29411547 ~ 29420180 (+) True G220227
TU298798 lncRNA downstream 698483 29440026 ~ 29440318 (+) True G220236
XM_015607472.2 mRNA upstream 104013 28624270 ~ 28631758 (+) False stpg4
XM_022684974.1 mRNA upstream 104013 28624272 ~ 28631758 (+) False stpg4
XM_007255781.3 mRNA upstream 104013 28624274 ~ 28631758 (+) True stpg4
XM_007255786.3 mRNA upstream 114540 28616054 ~ 28621231 (+) True LOC103028596
XM_015607470.2 mRNA upstream 127858 28578658 ~ 28607913 (+) False LOC103033108
XM_022684976.1 mRNA downstream 132477 28874020 ~ 29005591 (+) True LOC107197786
XM_007255794.3 mRNA downstream 267093 29008636 ~ 29012667 (+) True zfp36l2
XM_007235270.3 mRNA downstream 728798 29470341 ~ 29483040 (+) True haao
XM_007235276.2 mRNA downstream 759463 29501006 ~ 29502519 (+) True LOC103023539
XM_007235275.2 mRNA downstream 772611 29514154 ~ 29515720 (+) True LOC103023222
TU298587 other upstream 15110 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 186451 28490846 ~ 28549320 (+) False plekhh2
XR_002651960.1 other upstream 1499160 27230160 ~ 27236611 (+) False LOC111196018
TU298732 other downstream 399824 29141367 ~ 29142018 (+) True G220194
TU298921 other downstream 1046396 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 1046396 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 1046396 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 1046396 29787939 ~ 29793496 (+) False G220336

Expression Profile